Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : A1H2A    

Bonds between two atoms of the molecule

Total Number of Bonds: 59


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1' C2' N C doub 1.32 N Y
2 N1' C6' N C sing 1.33 N Y
3 C2' CM2 C C sing 1.51 N N
4 C2' N3' C N sing 1.32 N Y
5 N3' C4' N C doub 1.33 N Y
6 C4' N4' C N sing 1.38 N N
7 C4' C5' C C sing 1.4 N Y
8 C5' C6' C C doub 1.38 N Y
9 C5' C7' C C sing 1.51 N N
10 C7' N3 C N sing 1.47 N N
11 N3 C2 N C doub 1.29 N Y
12 N3 C4 N C sing 1.32 N Y
13 C2 S1 C S sing 1.71 N Y
14 C2 C1 C C sing 1.51 N N
15 S1 C5 S C sing 1.76 N Y
16 C5 C4 C C doub 1.34 N Y
17 C5 C6 C C sing 1.51 N N
18 C4 CM4 C C sing 1.51 N N
19 C6 C7 C C sing 1.53 N N
20 C7 O7 C O sing 1.43 N N
21 O7 PA O P sing 1.61 N N
22 PA O1A P O doub 1.48 N N
23 PA O2A P O sing 1.61 N N
24 PA O3A P O sing 1.61 N N
25 O3A PB O P sing 1.61 N N
26 PB O1B P O doub 1.48 N N
27 PB O2B P O sing 1.61 N N
28 PB O3B P O sing 1.61 N N
29 C1 O2 C O sing 1.43 N N
30 C1 C3 C C sing 1.51 N N
31 C1 C8 C C sing 1.53 N N
32 C3 O9 C O doub 1.21 N N
33 C3 O10 C O sing 1.34 N N
34 C8 C9 C C sing 1.53 N N
35 O2 HO2 O H sing 0.97 N N
36 C9 H92 C H sing 1.09 N N
37 C9 H91 C H sing 1.09 N N
38 C9 H9 C H sing 1.09 N N
39 C8 H8 C H sing 1.09 N N
40 C8 H81 C H sing 1.09 N N
41 C7 H72 C H sing 1.09 N N
42 C7 H71 C H sing 1.09 N N
43 C6 H61 C H sing 1.09 N N
44 C6 H62 C H sing 1.09 N N
45 C6' H6' C H sing 1.08 N N
46 C7' H7'1 C H sing 1.09 N N
47 C7' H7'2 C H sing 1.09 N N
48 CM2 HM21 C H sing 1.09 N N
49 CM2 HM23 C H sing 1.09 N N
50 CM2 HM22 C H sing 1.09 N N
51 CM4 HM42 C H sing 1.09 N N
52 CM4 HM41 C H sing 1.09 N N
53 CM4 HM43 C H sing 1.09 N N
54 N4' HN42 N H sing 0.97 N N
55 N4' HN41 N H sing 0.97 N N
56 O10 H1 O H sing 0.97 N N
57 O2A H2 O H sing 0.97 N N
58 O2B H3 O H sing 0.97 N N
59 O3B H4 O H sing 0.97 N N