Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : A6C

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 4.255 0.743 -0.058
2 N1 N N1 N N N 0 -2.569 -0.041 0.581
3 C2 C C2 N N N 0 -3.673 -0.05 -0.189
4 O2 O O2 N N N 0 -4.183 -1.115 -0.494
5 N3 N N3 N N N 0 -4.219 1.085 -0.622
6 C6 C C6 N N N 0 -1.985 1.139 0.932
7 C4 C C4 N N N 0 -3.685 2.257 -0.305
8 N4 N N4 N N N 0 -4.258 3.423 -0.758
9 C5 C C5 N N N 0 -2.528 2.302 0.499
10 C1' C C1' R N N 0 -1.995 -1.305 1.047
11 C2' C C2' S N N 0 -1.512 -2.123 -0.155
12 O2' O O2' N N N 0 -1.014 -3.385 0.295
13 C3' C C3' S N N 0 -0.396 -1.353 -0.866
14 O3' O O3' N N N 0 0.112 -2.138 -1.947
15 C4' C C4' R N N 0 0.73 -1.065 0.13
16 O4' O O4' N N N 0 0.207 -0.329 1.238
17 C5' C C5' N N N 0 1.822 -0.243 -0.558
18 OP1 O OP1 N N N 0 3.885 2.104 -0.504
19 O5' O O5' N N N 0 2.924 -0.074 0.336
20 C6' C C6' N N N 0 -0.808 -1.019 1.97
21 OP2 O OP2 N N N 0 5.223 0.842 1.225
22 OP3 O OP3 N N Y 0 5.021 -0.023 -1.25
23 HN4 H HN4 N N N 0 -5.054 3.39 -1.311
24 HN4A H HN4A N N N 0 -3.865 4.279 -0.525
25 H5 H H5 N N N 0 -2.081 3.248 0.766
26 H6 H H6 N N N 0 -1.099 1.147 1.55
27 H1' H H1' N N N 0 -2.752 -1.87 1.592
28 H2' H H2' N N N 0 -2.342 -2.283 -0.844
29 HO2' H HO2' N N N 0 -0.691 -3.955 -0.416
30 H3' H H3' N N N 0 -0.79 -0.413 -1.252
31 HO3' H HO3' N N Y 0 0.824 -1.711 -2.443
32 H4' H H4' N N N 0 1.151 -2.005 0.485
33 H5' H H5' N N N 0 2.159 -0.765 -1.454
34 H5'A H H5'A N N N 0 1.424 0.733 -0.833
35 H6' H H6' N N N 0 -1.137 -0.401 2.805
36 H6'A H H6'A N N N 0 -0.407 -1.959 2.349
37 HOP2 H HOP2 N N N 0 6.046 1.322 1.06
38 HOP3 H HOP3 N N Y 0 5.294 -0.923 -1.027