Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : A6C    

Bonds between two atoms of the molecule

Total Number of Bonds: 39


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OP1 P O P doub 1.48 N N
2 P O5' P O sing 1.61 N N
3 P OP2 P O sing 1.61 N N
4 P OP3 P O sing 1.61 N N
5 C6 N1 C N sing 1.36 N N
6 C1' N1 C N sing 1.46 N N
7 N1 C2 N C sing 1.35 N N
8 C2 O2 C O doub 1.22 N N
9 C2 N3 C N sing 1.33 N N
10 C4 N3 C N doub 1.33 N N
11 C5 C4 C C sing 1.41 N N
12 C4 N4 C N sing 1.38 N N
13 N4 HN4 N H sing 0.97 N N
14 N4 HN4A N H sing 0.97 N N
15 C6 C5 C C doub 1.35 N N
16 C5 H5 C H sing 1.08 N N
17 C6 H6 C H sing 1.08 N N
18 C2' C1' C C sing 1.53 N N
19 C1' C6' C C sing 1.53 N N
20 C1' H1' C H sing 1.09 N N
21 C3' C2' C C sing 1.53 N N
22 O2' C2' O C sing 1.43 N N
23 C2' H2' C H sing 1.09 N N
24 O2' HO2' O H sing 0.97 N N
25 O3' C3' O C sing 1.43 N N
26 C3' C4' C C sing 1.53 N N
27 C3' H3' C H sing 1.09 N N
28 O3' HO3' O H sing 0.97 N N
29 C5' C4' C C sing 1.53 N N
30 C4' O4' C O sing 1.43 N N
31 C4' H4' C H sing 1.09 N N
32 O4' C6' O C sing 1.43 N N
33 C5' O5' C O sing 1.43 N N
34 C5' H5' C H sing 1.09 N N
35 C5' H5'A C H sing 1.09 N N
36 C6' H6' C H sing 1.09 N N
37 C6' H6'A C H sing 1.09 N N
38 OP2 HOP2 O H sing 0.97 N N
39 OP3 HOP3 O H sing 0.97 N N