Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : ARX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 97


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -13.898 -1.009 0.642
2 C2 C C2 N Y N 0 -13.121 -0.498 1.579
3 N3 N N3 N Y N 0 -11.837 -0.278 1.39
4 C4 C C4 N Y N 0 -11.264 -0.568 0.227
5 C5 C C5 N Y N 0 -12.048 -1.114 -0.803
6 C6 C C6 N Y N 0 -13.413 -1.334 -0.552
7 N6 N N6 N N N 0 -14.235 -1.869 -1.529
8 N7 N N7 N Y N 0 -11.231 -1.313 -1.865
9 C8 C C8 N Y N 0 -10.024 -0.933 -1.559
10 N9 N N9 N Y N 0 -9.993 -0.466 -0.279
11 O5' O O5' N N N 0 -5.615 0.474 -1.94
12 O3' O O3' N N N 0 -6.022 -0.534 2.34
13 O2' O O2' N N N 0 -8.501 -1.063 2.579
14 O4' O O4' N N N 0 -7.83 0.519 -0.517
15 C5' C C5' N N N 0 -5.417 0.504 -0.744
16 C3' C C3' S N N 0 -6.611 -0.763 1.059
17 C2' C C2' R N N 0 -8.115 -1.084 1.204
18 C4' C C4' S N N 0 -6.583 0.528 0.211
19 C1' C C1' R N N 0 -8.818 0.051 0.427
20 C26 C C26 N N N 0 3.25 0.501 -0.774
21 O28 O O28 N N N 0 3.225 0.532 0.438
22 C25 C C25 N N N 0 1.961 0.482 -1.554
23 C24 C C24 N N N 0 0.778 0.507 -0.584
24 C23 C C23 N N N 0 -0.531 0.487 -1.376
25 C22 C C22 N N N 0 -1.714 0.512 -0.406
26 C21 C C21 N N N 0 -3.023 0.492 -1.198
27 N20 N N20 N N N 0 -4.156 0.516 -0.269
28 N27 N N27 N N N 0 4.431 0.484 -1.424
29 C29 C C29 R N N 0 5.685 0.503 -0.666
30 C37 C C37 N N N 0 6.056 1.949 -0.331
31 C38 C C38 N N N 0 5.005 2.541 0.61
32 C39 C C39 N N N 0 5.377 3.987 0.945
33 N40 N N40 N N N 0 4.37 4.554 1.847
34 C41 C C41 N N N 0 4.494 5.85 2.287
35 N43 N N43 N N N 0 3.549 6.382 3.133
36 N42 N N42 N N N 0 5.506 6.575 1.903
37 C30 C C30 N N N 0 6.781 -0.119 -1.492
38 O35 O O35 N N N 0 6.539 -0.536 -2.604
39 N31 N N31 N N N 0 8.03 -0.21 -0.994
40 C32 C C32 R N N 0 9.096 -0.815 -1.798
41 C78 C C78 N N N 0 10.183 -1.363 -0.872
42 C79 C C79 N N N 0 9.61 -2.507 -0.033
43 C85 C C85 N N N 0 10.698 -3.056 0.892
44 N77 N N77 N N N 0 10.149 -4.151 1.696
45 C86 C C86 N N N 0 10.947 -4.803 2.606
46 N93 N N93 N N N 0 10.432 -5.831 3.359
47 N94 N N94 N N N 0 12.192 -4.447 2.754
48 C75 C C75 N N N 0 9.69 0.228 -2.709
49 O77 O O77 N N N 0 9.266 1.363 -2.69
50 N76 N N76 N N N 0 10.694 -0.103 -3.546
51 H2 H H2 N N N 0 -13.556 -0.251 2.537
52 HN6 H HN6 N N N 0 -15.177 -2.011 -1.345
53 HN6A H HN6A N N N 0 -13.87 -2.102 -2.396
54 H8 H H8 N N N 0 -9.173 -0.981 -2.222
55 HO3' H HO3' N N N 0 -5.092 -0.269 2.304
56 HO2' H HO2' N N N 0 -8.089 -1.756 3.114
57 H3' H H3' N N N 0 -6.096 -1.572 0.54
58 H2' H H2' N N N 0 -8.346 -2.052 0.758
59 H4' H H4' N N N 0 -6.525 1.405 0.857
60 H1' H H1' N N N 0 -9.105 0.854 1.106
61 H25 H H25 N N N 0 1.916 1.355 -2.204
62 H25A H H25A N N N 0 1.916 -0.424 -2.159
63 H24 H H24 N N N 0 0.822 -0.367 0.066
64 H24A H H24A N N N 0 0.823 1.412 0.021
65 H23 H H23 N N N 0 -0.576 1.361 -2.026
66 H23A H H23A N N N 0 -0.576 -0.419 -1.981
67 H22 H H22 N N N 0 -1.67 -0.362 0.244
68 H22A H H22A N N N 0 -1.669 1.417 0.199
69 H21 H H21 N N N 0 -3.068 1.366 -1.848
70 H21A H H21A N N N 0 -3.068 -0.414 -1.803
71 HN20 H HN20 N N N 0 -3.998 0.54 0.688
72 HN27 H HN27 N N N 0 4.451 0.46 -2.393
73 H29 H H29 N N N 0 5.56 -0.063 0.257
74 H37 H H37 N N N 0 7.032 1.97 0.155
75 H37A H H37A N N N 0 6.094 2.537 -1.248
76 H38 H H38 N N N 0 4.029 2.52 0.125
77 H38A H H38A N N N 0 4.967 1.954 1.528
78 H39 H H39 N N N 0 6.352 4.008 1.431
79 H39A H H39A N N N 0 5.415 4.574 0.028
80 HN40 H HN40 N N N 0 3.616 4.014 2.132
81 HN43 H HN43 N N N 0 2.795 5.842 3.418
82 HN4A H HN4A N N N 0 3.636 7.297 3.443
83 HN42 H HN42 N N N 0 5.594 7.49 2.214
84 HN31 H HN31 N N N 0 8.224 0.124 -0.105
85 H32 H H32 N N N 0 8.683 -1.628 -2.395
86 H78 H H78 N N N 0 11.017 -1.733 -1.469
87 H78A H H78A N N N 0 10.533 -0.569 -0.212
88 H79 H H79 N N N 0 8.777 -2.138 0.564
89 H79A H H79A N N N 0 9.26 -3.301 -0.693
90 H85 H H85 N N N 0 11.531 -3.425 0.295
91 H85A H H85A N N N 0 11.048 -2.262 1.552
92 HN77 H HN77 N N N 0 9.222 -4.417 1.585
93 HN93 H HN93 N N N 0 9.505 -6.096 3.249
94 HN9A H HN9A N N N 0 10.995 -6.291 4.001
95 HN94 H HN94 N N N 0 12.755 -4.907 3.396
96 HN76 H HN76 N N N 0 11.077 0.568 -4.133
97 HN7A H HN7A N N N 0 11.034 -1.011 -3.562