Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : B5J

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 1.52 -2.113 -0.154
2 C13 C C2 N Y N 0 -0.624 -3.856 -0.269
3 C15 C C3 N Y N 0 1.338 1.073 0.143
4 C17 C C4 N Y N 0 2.196 2.501 -1.577
5 C20 C C5 N Y N 0 2.504 1.243 0.866
6 C01 C C6 N N N 0 0.047 0.056 2.617
7 C03 C C7 N Y N 0 -1.59 0.629 0.206
8 C04 C C8 N Y N 0 -2.059 0.252 -1.038
9 C05 C C9 N Y N 0 -3.281 0.717 -1.487
10 C06 C C10 N Y N 0 -4.033 1.561 -0.691
11 C07 C C11 N Y N 0 -3.564 1.938 0.553
12 C08 C C12 N Y N 0 -2.345 1.468 1.004
13 C09 C C13 N Y N 0 0.259 -1.685 0.22
14 C11 C C14 N Y N 0 1.707 -3.411 -0.59
15 C12 C C15 N Y N 0 0.635 -4.282 -0.648
16 C14 C C16 N Y N 0 -0.813 -2.555 0.157
17 C16 C C17 N Y N 0 1.184 1.702 -1.078
18 C18 C C18 N Y N 0 3.362 2.671 -0.854
19 C19 C C19 N Y N 0 3.516 2.042 0.367
20 P02 P P1 N N N 1 0.014 0.018 0.794
21 H1 H H1 N N N 0 2.357 -1.433 -0.108
22 H2 H H2 N N N 0 -1.461 -4.536 -0.314
23 H3 H H3 N N N 0 2.075 2.992 -2.531
24 H4 H H4 N N N 0 2.625 0.752 1.82
25 H5 H H5 N N N 0 -0.749 -0.577 3.008
26 H6 H H6 N N N 0 1.01 -0.311 2.97
27 H7 H H7 N N N 0 -0.101 1.079 2.961
28 H8 H H8 N N N 0 -1.471 -0.407 -1.66
29 H9 H H9 N N N 0 -3.647 0.423 -2.459
30 H10 H H10 N N N 0 -4.986 1.929 -1.044
31 H11 H H11 N N N 0 -4.152 2.597 1.175
32 H12 H H12 N N N 0 -1.979 1.762 1.976
33 H13 H H13 N N N 0 2.69 -3.745 -0.887
34 H14 H H14 N N N 0 0.783 -5.299 -0.982
35 H15 H H15 N N N 0 -1.797 -2.221 0.454
36 H16 H H16 N N N 0 0.273 1.569 -1.643
37 H17 H H17 N N N 0 4.153 3.294 -1.244
38 H18 H H18 N N N 0 4.427 2.175 0.932