Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : B5J    

Bonds between two atoms of the molecule

Total Number of Bonds: 40


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C06 C07 C C doub 1.38 N Y
2 C06 C05 C C sing 1.38 N Y
3 C07 C08 C C sing 1.38 N Y
4 C05 C04 C C doub 1.38 N Y
5 C08 C03 C C doub 1.38 N Y
6 C04 C03 C C sing 1.38 N Y
7 C03 P02 C P sing 1.81 N N
8 C14 C13 C C doub 1.38 N Y
9 C14 C09 C C sing 1.38 N Y
10 C16 C17 C C doub 1.38 N Y
11 C16 C15 C C sing 1.38 N Y
12 C17 C18 C C sing 1.38 N Y
13 C13 C12 C C sing 1.38 N Y
14 P02 C15 P C sing 1.81 N N
15 P02 C09 P C sing 1.81 N N
16 P02 C01 P C sing 1.82 N N
17 C15 C20 C C doub 1.38 N Y
18 C18 C19 C C doub 1.38 N Y
19 C09 C10 C C doub 1.38 N Y
20 C20 C19 C C sing 1.38 N Y
21 C12 C11 C C doub 1.38 N Y
22 C10 C11 C C sing 1.38 N Y
23 C10 H1 C H sing 1.08 N N
24 C13 H2 C H sing 1.08 N N
25 C17 H3 C H sing 1.08 N N
26 C20 H4 C H sing 1.08 N N
27 C01 H5 C H sing 1.09 N N
28 C01 H6 C H sing 1.09 N N
29 C01 H7 C H sing 1.09 N N
30 C04 H8 C H sing 1.08 N N
31 C05 H9 C H sing 1.08 N N
32 C06 H10 C H sing 1.08 N N
33 C07 H11 C H sing 1.08 N N
34 C08 H12 C H sing 1.08 N N
35 C11 H13 C H sing 1.08 N N
36 C12 H14 C H sing 1.08 N N
37 C14 H15 C H sing 1.08 N N
38 C16 H16 C H sing 1.08 N N
39 C18 H17 C H sing 1.08 N N
40 C19 H18 C H sing 1.08 N N