Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : BPG

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 39


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C3' C C3* N N N 0 0.69 1.078 4.838
2 O3' O O3* N N N 0 0.136 0.721 6.106
3 C2' C C2* N N N 0 0.792 -0.168 3.958
4 C12 C C12 N N N 0 1.386 0.213 2.6
5 C1' C C1* N N N 0 1.488 -1.033 1.719
6 N9 N N9 N Y N 0 2.056 -0.668 0.419
7 C4 C C4 N Y N 0 1.355 -0.279 -0.689
8 N3 N N3 N N N 0 0.057 -0.099 -0.956
9 C2 C C2 N N N 0 -0.344 0.297 -2.143
10 N2 N N2 N N N 0 -1.688 0.461 -2.372
11 N1 N N1 N N N 0 0.535 0.55 -3.153
12 C6 C C6 N N N 0 1.863 0.397 -2.956
13 O6 O O6 N N N 0 2.658 0.621 -3.853
14 C5 C C5 N Y N 0 2.309 -0.029 -1.683
15 N7 N N7 N Y N 0 3.526 -0.282 -1.145
16 C8 C C8 N Y N 0 3.381 -0.658 0.092
17 C04 C C04 N Y N 0 -4.448 -0.627 0.551
18 C05 C C05 N Y N 0 -4.705 0.454 -0.271
19 C06 C C06 N Y N 0 -3.792 0.818 -1.241
20 C01 C C01 N Y N 0 -2.615 0.096 -1.391
21 C02 C C02 N Y N 0 -2.363 -0.993 -0.567
22 C03 C C03 N Y N 0 -3.277 -1.348 0.404
23 H3'1 H 1H3* N N N 0 0.046 1.812 4.354
24 H3'2 H 2H3* N N N 0 1.683 1.503 4.983
25 H3' H H3* N N N 0 0.088 1.533 6.629
26 H2'1 H 1H2* N N N 0 1.436 -0.903 4.442
27 H2'2 H 2H2* N N N 0 -0.2 -0.594 3.813
28 H121 H 1H12 N N N 0 0.742 0.947 2.116
29 H122 H 2H12 N N N 0 2.379 0.638 2.744
30 H1'1 H 1H1* N N N 0 2.132 -1.768 2.203
31 H1'2 H 2H1* N N N 0 0.495 -1.459 1.575
32 HN21 H 1HN2 N N N 0 -1.995 0.831 -3.215
33 HN1 H HN1 N N N 0 0.206 0.843 -4.017
34 H8 H H8 N N N 0 4.188 -0.921 0.759
35 H041 H 1H04 N N N 0 -5.163 -0.909 1.309
36 H051 H 1H05 N N N 0 -5.62 1.015 -0.154
37 H061 H 1H06 N N N 0 -3.993 1.663 -1.882
38 H021 H 1H02 N N N 0 -1.449 -1.557 -0.681
39 H031 H 1H03 N N N 0 -3.08 -2.193 1.048