Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : BPG    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C3' O3' C O sing 1.43 N N
2 C3' C2' C C sing 1.53 N N
3 C3' H3'1 C H sing 1.09 N N
4 C3' H3'2 C H sing 1.09 N N
5 O3' H3' O H sing 0.97 N N
6 C2' C12 C C sing 1.53 N N
7 C2' H2'1 C H sing 1.09 N N
8 C2' H2'2 C H sing 1.09 N N
9 C12 C1' C C sing 1.53 N N
10 C12 H121 C H sing 1.09 N N
11 C12 H122 C H sing 1.09 N N
12 C1' N9 C N sing 1.46 N N
13 C1' H1'1 C H sing 1.09 N N
14 C1' H1'2 C H sing 1.09 N N
15 N9 C4 N C sing 1.37 N Y
16 N9 C8 N C sing 1.36 N Y
17 C4 N3 C N sing 1.34 N N
18 C4 C5 C C doub 1.4 N Y
19 N3 C2 N C doub 1.31 N N
20 C2 N2 C N sing 1.37 N N
21 C2 N1 C N sing 1.36 N N
22 N2 C01 N C sing 1.4 N N
23 N2 HN21 N H sing 0.97 N N
24 N1 C6 N C sing 1.35 N N
25 N1 HN1 N H sing 0.97 N N
26 C6 O6 C O doub 1.22 N N
27 C6 C5 C C sing 1.41 N N
28 C5 N7 C N sing 1.35 N Y
29 N7 C8 N C doub 1.3 N Y
30 C8 H8 C H sing 1.08 N N
31 C04 C05 C C doub 1.38 N Y
32 C04 C03 C C sing 1.38 N Y
33 C04 H041 C H sing 1.08 N N
34 C05 C06 C C sing 1.38 N Y
35 C05 H051 C H sing 1.08 N N
36 C06 C01 C C doub 1.39 N Y
37 C06 H061 C H sing 1.08 N N
38 C01 C02 C C sing 1.39 N Y
39 C02 C03 C C doub 1.38 N Y
40 C02 H021 C H sing 1.08 N N
41 C03 H031 C H sing 1.08 N N