Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C2G

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 51


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 0.747 0.546 -5.04
2 C2 C C2 N Y N 0 1.298 -0.673 -4.906
3 N3 N N3 N Y N 0 2.427 -0.99 -5.538
4 C4 C C4 N Y N 0 3.038 -0.108 -6.318
5 C5 C C5 N Y N 0 2.49 1.18 -6.474
6 C6 C C6 N Y N 0 1.338 1.486 -5.83
7 O2 O O2 N N N 0 0.756 -1.502 -4.195
8 N4 N N4 N N N 0 4.204 -0.447 -6.965
9 C1' C C1* R N N 0 -0.494 0.866 -4.332
10 C2' C C2* R N N 0 -1.615 -0.114 -4.743
11 O2' O O2* N N N 0 -2.459 0.468 -5.738
12 C3' C C3* S N N 0 -2.404 -0.349 -3.433
13 C4' C C4* R N N 0 -1.667 0.519 -2.39
14 O4' O O4* N N N 0 -0.329 0.668 -2.911
15 O3' O O3* N N N 0 -3.758 0.082 -3.579
16 C5' C C5* N N N 0 -1.635 -0.186 -1.033
17 O5' O O5* N N N 0 -0.888 0.601 -0.104
18 PA P PA S N N 0 -0.895 -0.196 1.294
19 O1A O O1A N N N 0 -0.267 -1.523 1.107
20 O2A O O2A N N N 0 -2.413 -0.386 1.796
21 O3A O O3A N N N 0 -0.066 0.639 2.393
22 PB P PB R N N 0 -0.114 -0.212 3.758
23 O1B O O1B N N N 0 0.5 -1.539 3.534
24 O2B O O2B N N N 0 -1.645 -0.402 4.219
25 O3B O O3B N N N 0 0.698 0.568 4.907
26 O1G O O1G N N N 0 2.0 0.241 9.549
27 C1G C C1G N N N 0 1.292 -0.402 8.487
28 C2G C C2G S N N 0 1.377 0.456 7.224
29 O2G O O2G N N N 0 0.793 1.735 7.477
30 C3G C C3G N N N 0 0.619 -0.233 6.087
31 HC5 H HC5 N N N 0 2.975 1.91 -7.106
32 HC6 H HC6 N N N 0 0.896 2.466 -5.938
33 HN41 H 1HN4 N N N 0 4.581 -1.333 -6.852
34 HN42 H 2HN4 N N N 0 4.646 0.198 -7.537
35 HC3 H HC3 N N N 0 -2.368 -1.401 -3.148
36 HC1 H HC1 N N N 0 -0.794 1.894 -4.539
37 HC2 H HC2 N N N 0 -1.188 -1.049 -5.105
38 HO2 H HO2 N N N 0 -3.17 -0.165 -5.907
39 HC4 H HC4 N N N 0 -2.149 1.493 -2.299
40 HO3 H HO3 N N N 0 -4.165 -0.493 -4.24
41 HC51 H 1HC5 N N N 0 -2.653 -0.313 -0.665
42 HC52 H 2HC5 N N N 0 -1.163 -1.162 -1.142
43 H2A H H2A N N N 0 -2.784 0.5 1.905
44 H1G2 H 2H1G N N N 0 1.737 -1.378 8.294
45 H2B H H2B N N N 0 -2.008 0.484 4.354
46 H1G H H1G N N N 0 1.922 -0.33 10.324
47 H1G1 H 1H1G N N N 0 0.247 -0.529 8.771
48 H3G1 H 1H3G N N N 0 -0.424 -0.36 6.371
49 H2G H H2G N N N 0 2.421 0.583 6.94
50 HOG H HOG N N N 0 -0.127 1.578 7.725
51 H3G2 H 2H3G N N N 0 1.064 -1.209 5.894