Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : C2G    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C sing 1.34 N Y
2 N1 C6 N C sing 1.36 N Y
3 N1 C1' N C sing 1.46 N N
4 C2 N3 C N sing 1.33 N Y
5 C2 O2 C O doub 1.22 N N
6 N3 C4 N C doub 1.33 N Y
7 C4 C5 C C sing 1.41 N Y
8 C4 N4 C N sing 1.38 N N
9 C5 C6 C C doub 1.35 N Y
10 C5 HC5 C H sing 1.08 N N
11 C6 HC6 C H sing 1.08 N N
12 N4 HN41 N H sing 0.97 N N
13 N4 HN42 N H sing 0.97 N N
14 C1' C2' C C sing 1.54 N N
15 C1' O4' C O sing 1.44 N N
16 C1' HC1 C H sing 1.09 N N
17 C2' O2' C O sing 1.43 N N
18 C2' C3' C C sing 1.55 N N
19 C2' HC2 C H sing 1.09 N N
20 O2' HO2 O H sing 0.97 N N
21 C3' C4' C C sing 1.54 N N
22 C3' O3' C O sing 1.43 N N
23 C3' HC3 C H sing 1.09 N N
24 C4' O4' C O sing 1.44 N N
25 C4' C5' C C sing 1.53 N N
26 C4' HC4 C H sing 1.09 N N
27 O3' HO3 O H sing 0.97 N N
28 C5' O5' C O sing 1.43 N N
29 C5' HC51 C H sing 1.09 N N
30 C5' HC52 C H sing 1.09 N N
31 O5' PA O P sing 1.61 N N
32 PA O1A P O doub 1.48 N N
33 PA O2A P O sing 1.61 N N
34 PA O3A P O sing 1.61 N N
35 O2A H2A O H sing 0.97 N N
36 O3A PB O P sing 1.61 N N
37 PB O1B P O doub 1.48 N N
38 PB O2B P O sing 1.61 N N
39 PB O3B P O sing 1.61 N N
40 O2B H2B O H sing 0.97 N N
41 O3B C3G O C sing 1.43 N N
42 O1G C1G O C sing 1.43 N N
43 O1G H1G O H sing 0.97 N N
44 C1G C2G C C sing 1.53 N N
45 C1G H1G1 C H sing 1.09 N N
46 C1G H1G2 C H sing 1.09 N N
47 C2G O2G C O sing 1.43 N N
48 C2G C3G C C sing 1.53 N N
49 C2G H2G C H sing 1.09 N N
50 O2G HOG O H sing 0.97 N N
51 C3G H3G1 C H sing 1.09 N N
52 C3G H3G2 C H sing 1.09 N N