Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C5Q

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 35


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N Y N 0 4.074 2.071 0.192
2 C2 C C2 N Y N 0 4.816 1.452 -0.804
3 C3 C C3 N Y N 0 2.996 1.442 0.748
4 C4 C C4 N Y N 0 -0.713 1.567 1.226
5 C5 C C5 N Y N 0 4.477 0.195 -1.254
6 C6 C C6 N Y N 0 -1.764 2.27 0.663
7 C7 C C7 N Y N 0 2.638 0.165 0.311
8 C8 C C8 N Y N 0 -0.646 0.197 1.103
9 C9 C C9 N Y N 0 -1.646 -0.492 0.411
10 C10 C C10 N Y N 0 3.38 -0.463 -0.706
11 C11 C C11 N Y N 0 -2.76 1.604 -0.031
12 C12 C C12 N Y N 0 -2.712 0.218 -0.155
13 C13 C C13 N Y N 0 1.733 -1.863 -0.095
14 C14 C C14 N Y N 0 1.574 -0.775 0.674
15 C15 C C15 N N N 0 0.506 -0.56 1.714
16 C16 C C16 N N N 0 -1.578 -1.959 0.276
17 C17 C C17 N N N 0 -4.291 0.986 -1.535
18 N18 N N18 N Y N 0 2.806 -1.694 -0.928
19 O19 O O19 N N N 0 -0.943 -2.51 -0.777
20 O20 O O20 N N N 0 -2.095 -2.67 1.114
21 O21 O O21 N N N 0 -3.88 2.059 -0.666
22 O22 O O22 N N N 0 -3.793 -0.195 -0.873
23 H1 H H1 N N N 0 4.353 3.057 0.534
24 H2 H H2 N N N 0 5.668 1.96 -1.231
25 H3 H H3 N N N 0 2.424 1.93 1.523
26 H4 H H4 N N N 0 0.062 2.097 1.762
27 H5 H H5 N N N 0 5.061 -0.279 -2.03
28 H6 H H6 N N N 0 -1.808 3.344 0.764
29 H13 H H13 N N N 0 1.105 -2.741 -0.064
30 H15 H H15 N N N 0 0.917 0.014 2.545
31 H15A H H15A N N N 0 0.154 -1.525 2.079
32 H17 H H17 N N N 0 -5.378 0.949 -1.61
33 H17A H H17A N N N 0 -3.841 1.098 -2.521
34 HO19 H HO19 N N N 0 -0.925 -3.476 -0.822
35 HN18 H HN18 N N N 0 3.116 -2.346 -1.576