Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : C5Q    

Bonds between two atoms of the molecule

Total Number of Bonds: 38


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C3 C1 C C doub 1.37 N Y
2 C1 C2 C C sing 1.39 N Y
3 C1 H1 C H sing 1.08 N N
4 C2 C5 C C doub 1.38 N Y
5 C2 H2 C H sing 1.08 N N
6 C3 C7 C C sing 1.4 N Y
7 C3 H3 C H sing 1.08 N N
8 C6 C4 C C doub 1.38 N Y
9 C4 C8 C C sing 1.38 N Y
10 C4 H4 C H sing 1.08 N N
11 C10 C5 C C sing 1.39 N Y
12 C5 H5 C H sing 1.08 N N
13 C11 C6 C C sing 1.38 N Y
14 C6 H6 C H sing 1.08 N N
15 C14 C7 C C sing 1.47 N Y
16 C7 C10 C C doub 1.41 N Y
17 C9 C8 C C doub 1.4 N Y
18 C8 C15 C C sing 1.51 N N
19 C12 C9 C C sing 1.4 N Y
20 C9 C16 C C sing 1.47 N N
21 N18 C10 N C sing 1.38 N Y
22 O21 C11 O C sing 1.37 N N
23 C11 C12 C C doub 1.39 N Y
24 O22 C12 O C sing 1.36 N N
25 C14 C13 C C doub 1.34 N Y
26 C13 N18 C N sing 1.37 N Y
27 C13 H13 C H sing 1.08 N N
28 C15 C14 C C sing 1.51 N N
29 C15 H15 C H sing 1.09 N N
30 C15 H15A C H sing 1.09 N N
31 O20 C16 O C doub 1.21 N N
32 C16 O19 C O sing 1.35 N N
33 C17 O21 C O sing 1.44 N N
34 C17 O22 C O sing 1.44 N N
35 C17 H17 C H sing 1.09 N N
36 C17 H17A C H sing 1.09 N N
37 O19 HO19 O H sing 0.97 N N
38 N18 HN18 N H sing 0.97 N N