Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : C5U

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 2.627 0.472 -0.528
2 C13 C C2 N N N 0 3.919 -1.336 -1.35
3 C15 C C3 N Y N 0 0.013 -0.717 0.771
4 C17 C C4 N Y N 0 0.042 -1.255 3.104
5 C20 C C5 N Y N 0 -0.222 -2.045 0.467
6 C24 C C6 N N N 0 2.706 3.065 0.475
7 O01 O O1 N N N 0 -2.548 0.749 -1.954
8 C02 C C7 N N N 0 -2.317 0.76 -0.759
9 O03 O O2 N N N 0 -3.253 0.335 0.114
10 C04 C C8 N N N 0 -4.494 -0.116 -0.434
11 C05 C C9 N N N 0 -1.066 1.22 -0.286
12 C06 C C10 N N N 0 -0.966 2.469 0.202
13 N07 N N1 N N N 0 0.23 2.948 0.661
14 C08 C C11 N N N 0 1.401 2.33 0.313
15 C09 C C12 N N N 0 1.4 1.076 -0.17
16 O11 O O3 N N N 0 3.669 1.086 -0.396
17 O12 O O4 N N N 0 2.644 -0.789 -1.01
18 C14 C C13 N N N 0 0.122 0.301 -0.335
19 C16 C C14 N Y N 0 0.142 -0.322 2.089
20 C18 C C15 N Y N 0 -0.187 -2.584 2.8
21 C19 C C16 N Y N 0 -0.322 -2.978 1.482
22 N21 N N2 N N N 1 -0.366 -2.467 -0.944
23 O22 O O5 N N N -1 -0.991 -1.774 -1.726
24 O23 O O6 N N N 0 0.141 -3.508 -1.323
25 C25 C C17 N N N 0 -2.187 3.351 0.245
26 H1 H H1 N N N 0 3.79 -2.352 -1.724
27 H2 H H2 N N N 0 4.384 -0.722 -2.121
28 H3 H H3 N N N 0 4.555 -1.353 -0.465
29 H4 H H4 N N N 0 0.143 -0.946 4.134
30 H5 H H5 N N N 0 2.516 4.06 0.876
31 H6 H H6 N N N 0 3.351 2.514 1.159
32 H7 H H7 N N N 0 3.196 3.152 -0.495
33 H8 H H8 N N N 0 -5.155 -0.43 0.374
34 H9 H H9 N N N 0 -4.961 0.695 -0.992
35 H10 H H10 N N N 0 -4.311 -0.958 -1.101
36 H13 H H13 N N N 0 0.249 3.729 1.236
37 H17 H H17 N N N 0 0.135 -0.213 -1.296
38 H18 H H18 N N N 0 0.321 0.717 2.327
39 H19 H H19 N N N 0 -0.265 -3.314 3.592
40 H20 H H20 N N N 0 -0.501 -4.017 1.244
41 H21 H H21 N N N 0 -2.755 3.143 1.152
42 H22 H H22 N N N 0 -1.88 4.397 0.24
43 H23 H H23 N N N 0 -2.81 3.152 -0.627