Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : C5U    

Bonds between two atoms of the molecule

Total Number of Bonds: 44


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C13 O12 C O sing 1.43 N N
2 O12 C10 O C sing 1.35 N N
3 O11 C10 O C doub 1.22 N N
4 C18 C17 C C sing 1.38 N Y
5 C18 C19 C C doub 1.38 N Y
6 C17 C16 C C doub 1.38 N Y
7 C10 C09 C C sing 1.41 N N
8 C19 C20 C C sing 1.38 N Y
9 C16 C15 C C sing 1.38 N Y
10 C20 C15 C C doub 1.38 N Y
11 C20 N21 C N sing 1.48 N N
12 C24 C08 C C sing 1.51 N N
13 C15 C14 C C sing 1.51 N N
14 C09 C08 C C doub 1.34 N N
15 C09 C14 C C sing 1.5 N N
16 N21 O22 N O sing 1.22 N N
17 N21 O23 N O doub 1.22 N N
18 C08 N07 C N sing 1.37 N N
19 C14 C05 C C sing 1.5 N N
20 C05 C06 C C doub 1.34 N N
21 C05 C02 C C sing 1.41 N N
22 N07 C06 N C sing 1.37 N N
23 O03 C02 O C sing 1.35 N N
24 O03 C04 O C sing 1.43 N N
25 C06 C25 C C sing 1.51 N N
26 C02 O01 C O doub 1.22 N N
27 C13 H1 C H sing 1.09 N N
28 C13 H2 C H sing 1.09 N N
29 C13 H3 C H sing 1.09 N N
30 C17 H4 C H sing 1.08 N N
31 C24 H5 C H sing 1.09 N N
32 C24 H6 C H sing 1.09 N N
33 C24 H7 C H sing 1.09 N N
34 C04 H8 C H sing 1.09 N N
35 C04 H9 C H sing 1.09 N N
36 C04 H10 C H sing 1.09 N N
37 N07 H13 N H sing 0.97 N N
38 C14 H17 C H sing 1.09 N N
39 C16 H18 C H sing 1.08 N N
40 C18 H19 C H sing 1.08 N N
41 C19 H20 C H sing 1.08 N N
42 C25 H21 C H sing 1.09 N N
43 C25 H22 C H sing 1.09 N N
44 C25 H23 C H sing 1.09 N N