Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : D16

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -4.771 -2.421 0.333
2 C2 C C2 N N N 0 -6.094 -2.348 0.555
3 CM2 C CM2 N N N 0 -6.803 -3.579 1.057
4 N3 N N3 N N N 0 -6.797 -1.267 0.36
5 C4 C C4 N N N 0 -6.235 -0.127 -0.086
6 O4 O O4 N N N 0 -6.906 0.875 -0.264
7 C4A C C4A N Y N 0 -4.786 -0.127 -0.354
8 C5 C C5 N Y N 0 -4.12 1.005 -0.817
9 C6 C C6 N Y N 0 -2.762 0.944 -1.048
10 C7 C C7 N Y N 0 -2.062 -0.232 -0.824
11 C8 C C8 N Y N 0 -2.709 -1.361 -0.366
12 C8A C C8A N Y N 0 -4.075 -1.32 -0.126
13 C9 C C9 N N N 0 -2.034 2.165 -1.549
14 N10 N N10 N N N 0 -1.558 2.952 -0.409
15 C11 C C11 N Y N 0 1.976 1.954 0.767
16 S13 S S13 N Y N 0 0.782 1.523 -0.449
17 C14 C C14 N Y N 0 -0.303 2.707 0.126
18 C15 C C15 N Y N 0 0.231 3.379 1.181
19 C16 C C16 N Y N 0 1.488 2.971 1.542
20 C C C N N N 0 3.244 1.34 0.924
21 O O O N N N 0 3.998 1.717 1.803
22 N N N N N N 0 3.615 0.34 0.1
23 CA C CA S N N 0 4.925 -0.294 0.262
24 CB C CB N N N 0 4.877 -1.715 -0.304
25 CG C CG N N N 0 3.911 -2.563 0.526
26 CD C CD N N N 0 3.864 -3.962 -0.031
27 OE1 O OE1 N N N 0 4.535 -4.252 -0.994
28 OE2 O OE2 N N N 0 3.078 -4.887 0.542
29 CT C CT N N N 0 5.966 0.506 -0.477
30 O1 O O1 N N N 0 5.646 1.505 -1.078
31 O2 O O2 N N N 0 7.248 0.11 -0.468
32 CP1 C CP1 N N N 0 -2.408 3.997 0.166
33 HN1 H HN1 N N N 0 -4.299 -3.252 0.5
34 HM21 H HM21 N N N 0 -6.795 -3.585 2.147
35 HM22 H HM22 N N N 0 -7.833 -3.576 0.701
36 HM23 H HM23 N N N 0 -6.294 -4.469 0.685
37 H5 H H5 N N N 0 -4.662 1.922 -0.993
38 H7 H H7 N N N 0 -0.998 -0.265 -1.011
39 H8 H H8 N N N 0 -2.155 -2.272 -0.196
40 H91 H H91 N N N 0 -1.184 1.856 -2.158
41 H92 H H92 N N N 0 -2.711 2.77 -2.151
42 H15 H H15 N N N 0 -0.294 4.172 1.693
43 H16 H H16 N N N 0 2.041 3.41 2.36
44 HN H HN N N N 0 3.014 0.04 -0.6
45 HA H HA N N N 0 5.181 -0.334 1.321
46 HB1 H HB1 N N N 0 4.535 -1.683 -1.338
47 HB2 H HB2 N N N 0 5.873 -2.156 -0.264
48 HG1 H HG1 N N N 0 4.254 -2.595 1.561
49 HG2 H HG2 N N N 0 2.915 -2.122 0.487
50 HOE2 H HOE2 N N N 0 3.081 -5.77 0.149
51 HO2 H HO2 N N N 0 7.88 0.656 -0.957
52 HP11 H HP11 N N N 0 -3.028 3.568 0.954
53 HP12 H HP12 N N N 0 -1.783 4.785 0.585
54 HP13 H HP13 N N N 0 -3.047 4.414 -0.612