Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : D16    

Bonds between two atoms of the molecule

Total Number of Bonds: 56


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C sing 1.34 N N
2 N1 C8A N C sing 1.38 N N
3 N1 HN1 N H sing 0.97 N N
4 C2 CM2 C C sing 1.51 N N
5 C2 N3 C N doub 1.3 N N
6 CM2 HM21 C H sing 1.09 N N
7 CM2 HM22 C H sing 1.09 N N
8 CM2 HM23 C H sing 1.09 N N
9 N3 C4 N C sing 1.35 N N
10 C4 O4 C O doub 1.22 N N
11 C4 C4A C C sing 1.47 N N
12 C4A C5 C C doub 1.39 N Y
13 C4A C8A C C sing 1.41 N Y
14 C5 C6 C C sing 1.38 N Y
15 C5 H5 C H sing 1.08 N N
16 C6 C7 C C doub 1.39 N Y
17 C6 C9 C C sing 1.51 N N
18 C7 C8 C C sing 1.38 N Y
19 C7 H7 C H sing 1.08 N N
20 C8 C8A C C doub 1.39 N Y
21 C8 H8 C H sing 1.08 N N
22 C9 N10 C N sing 1.46 N N
23 C9 H91 C H sing 1.09 N N
24 C9 H92 C H sing 1.09 N N
25 N10 C14 N C sing 1.39 N N
26 N10 CP1 N C sing 1.46 N N
27 C11 S13 C S sing 1.76 N Y
28 C11 C16 C C doub 1.37 N Y
29 C11 C C C sing 1.42 N N
30 S13 C14 S C sing 1.71 N Y
31 C14 C15 C C doub 1.36 N Y
32 C15 C16 C C sing 1.37 N Y
33 C15 H15 C H sing 1.08 N N
34 C16 H16 C H sing 1.08 N N
35 C O C O doub 1.22 N N
36 C N C N sing 1.35 N N
37 N CA N C sing 1.46 N N
38 N HN N H sing 0.97 N N
39 CA CB C C sing 1.53 N N
40 CA CT C C sing 1.51 N N
41 CA HA C H sing 1.09 N N
42 CB CG C C sing 1.53 N N
43 CB HB1 C H sing 1.09 N N
44 CB HB2 C H sing 1.09 N N
45 CG CD C C sing 1.51 N N
46 CG HG1 C H sing 1.09 N N
47 CG HG2 C H sing 1.09 N N
48 CD OE1 C O doub 1.21 N N
49 CD OE2 C O sing 1.34 N N
50 OE2 HOE2 O H sing 0.97 N N
51 CT O1 C O doub 1.21 N N
52 CT O2 C O sing 1.34 N N
53 O2 HO2 O H sing 0.97 N N
54 CP1 HP11 C H sing 1.09 N N
55 CP1 HP12 C H sing 1.09 N N
56 CP1 HP13 C H sing 1.09 N N