Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : E5H

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 54


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O01 O O1 N N N 0 1.047 -2.352 -0.185
2 C02 C C1 N N N 0 0.995 -1.153 -0.016
3 N03 N N1 N N N 0 2.132 -0.44 0.108
4 C04 C C2 N N N 0 3.43 -1.114 0.039
5 C05 C C3 N N N 0 4.549 -0.084 0.208
6 C06 C C4 N N N 0 5.906 -0.789 0.136
7 N07 N N2 N N N 0 6.98 0.2 0.298
8 C08 C C5 N N N 0 7.007 1.138 -0.832
9 C09 C C6 N N N 0 8.038 2.236 -0.561
10 C10 C C7 N N N 0 9.417 1.599 -0.369
11 C11 C C8 N N N 0 9.349 0.591 0.782
12 C12 C C9 N N N 0 8.281 -0.459 0.472
13 C13 C C10 N N N 0 -0.341 -0.458 0.049
14 O14 O O2 N N N 0 -1.386 -1.419 -0.114
15 C15 C C11 N Y N 0 -2.662 -0.954 -0.081
16 C16 C C12 N Y N 0 -2.901 0.401 0.1
17 C17 C C13 N Y N 0 -4.196 0.876 0.134
18 C18 C C14 N Y N 0 -5.264 -0.007 -0.013
19 C19 C C15 N Y N 0 -6.658 0.501 0.023
20 C25 C C16 N Y N 0 -5.021 -1.367 -0.194
21 C26 C C17 N Y N 0 -3.725 -1.835 -0.232
22 H1 H H1 N N N 0 2.09 0.52 0.243
23 H2 H H2 N N N 0 3.497 -1.856 0.834
24 H3 H H3 N N N 0 3.533 -1.607 -0.928
25 H4 H H4 N N N 0 4.483 0.658 -0.587
26 H5 H H5 N N N 0 4.447 0.409 1.175
27 H6 H H6 N N N 0 5.972 -1.531 0.931
28 H7 H H7 N N N 0 6.008 -1.281 -0.831
29 H9 H H9 N N N 0 7.278 0.603 -1.742
30 H10 H H10 N N N 0 6.022 1.587 -0.954
31 H11 H H11 N N N 0 8.069 2.923 -1.406
32 H12 H H12 N N N 0 7.76 2.781 0.342
33 H13 H H13 N N N 0 9.712 1.087 -1.285
34 H14 H H14 N N N 0 10.146 2.373 -0.133
35 H15 H H15 N N N 0 10.317 0.103 0.895
36 H16 H H16 N N N 0 9.092 1.11 1.705
37 H17 H H17 N N N 0 8.22 -1.17 1.296
38 H18 H H18 N N N 0 8.545 -0.987 -0.445
39 H19 H H19 N N N 0 -0.448 0.035 1.015
40 H20 H H20 N N N 0 -0.403 0.285 -0.747
41 H21 H H21 N N N 0 -2.073 1.085 0.214
42 H22 H H22 N N N 0 -4.381 1.931 0.275
43 H26 H H26 N N N 0 -5.847 -2.053 -0.308
44 H27 H H27 N N N 0 -3.536 -2.888 -0.377
45 C1 C C18 N Y N 0 -7.727 -0.38 -0.124
46 C2 C C19 N Y N 0 -9.022 0.098 -0.09
47 C3 C C20 N Y N 0 -9.259 1.449 0.089
48 C4 C C21 N Y N 0 -8.201 2.328 0.236
49 C5 C C22 N Y N 0 -6.903 1.86 0.209
50 H8 H H8 N N N 0 -7.544 -1.435 -0.264
51 H23 H H23 N N N 0 -9.851 -0.585 -0.204
52 H24 H H24 N N N 0 -10.273 1.818 0.115
53 H25 H H25 N N N 0 -8.391 3.382 0.375
54 H28 H H28 N N N 0 -6.077 2.548 0.324