Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : F3N

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 0.054 5.181 0.164
2 OP1 O OP1 N N N 0 1.48 5.345 -0.197
3 OP2 O OP2 N N N 0 -0.869 5.635 -1.075
4 C1' C C1' R N N 0 -2.047 -0.282 0.468
5 C2' C C2' R N N 0 -1.059 -0.965 -0.504
6 O2' O O2' N N N 0 -0.575 -2.189 0.053
7 C3' C C3' S N N 0 0.091 0.056 -0.65
8 N3' N N3' N N N 0 1.352 -0.521 -0.175
9 C4' C C4' S N N 0 -0.337 1.235 0.251
10 O4' O O4' N N N 0 -1.775 1.13 0.337
11 C5' C C5' N N N 0 0.063 2.566 -0.388
12 O5' O O5' N N N 0 -0.237 3.636 0.511
13 N9 N N9 N Y N 0 -3.429 -0.574 0.079
14 C8 C C8 N Y N 0 -4.209 0.176 -0.751
15 N7 N N7 N Y N 0 -5.381 -0.376 -0.877
16 C6 C C6 N Y N 0 -6.403 -2.492 0.104
17 N6 N N6 N N N 0 -7.655 -2.406 -0.48
18 C5 C C5 N Y N 0 -5.427 -1.511 -0.139
19 C4 C C4 N Y N 0 -4.174 -1.654 0.479
20 N3 N N3 N Y N 0 -3.957 -2.705 1.263
21 C2 C C2 N Y N 0 -4.899 -3.603 1.458
22 N1 N N1 N Y N 0 -6.091 -3.513 0.896
23 C C C N N N 0 2.118 -1.248 -1.013
24 O O O N N N 0 1.763 -1.425 -2.159
25 CA C CA S N N 0 3.414 -1.841 -0.525
26 N N N N N N 0 3.814 -2.942 -1.412
27 CB C CB N N N 0 4.501 -0.763 -0.529
28 CE1 C CE1 N Y N 0 7.142 -1.737 1.987
29 CG C CG N Y N 0 5.764 -1.322 0.073
30 CD1 C CD1 N Y N 0 5.985 -1.22 1.434
31 CZ C CZ N Y N 0 8.077 -2.356 1.179
32 CE2 C CE2 N Y N 0 7.856 -2.459 -0.181
33 CD2 C CD2 N Y N 0 6.7 -1.941 -0.735
34 OP3 O OP3 N N Y 0 -0.284 6.092 1.447
35 HOP2 H HOP2 N N N 0 -1.818 5.554 -0.909
36 H1' H H1' N N N 0 -1.864 -0.61 1.491
37 H2' H H2' N N N 0 -1.536 -1.148 -1.467
38 HO2' H HO2' N N N 0 -1.266 -2.845 0.222
39 H3' H H3' N N N 0 0.184 0.38 -1.686
40 H6 H H6 N N N 0 1.636 -0.379 0.741
41 H4' H H4' N N N 0 0.11 1.139 1.241
42 H5' H H5' N N N 0 1.131 2.56 -0.602
43 H5'' H H5'' N N N 0 -0.493 2.705 -1.316
44 H8 H H8 N N N 0 -3.9 1.092 -1.232
45 H61 H H61 N N N 0 -8.317 -3.095 -0.313
46 H62 H H62 N N N 0 -7.871 -1.656 -1.056
47 HA H HA N N N 0 3.282 -2.22 0.488
48 HB3 H HB3 N N N 0 4.696 -0.447 -1.554
49 H H H N N N 0 3.143 -3.695 -1.377
50 H2 H H2 N N N 0 -4.69 -4.445 2.101
51 HB2 H HB2 N N N 0 4.166 0.092 0.058
52 HD1 H HD1 N N N 0 5.254 -0.737 2.065
53 HE1 H HE1 N N N 0 7.315 -1.658 3.05
54 HZ H HZ N N N 0 8.981 -2.76 1.611
55 HE2 H HE2 N N N 0 8.587 -2.942 -0.812
56 H1 H H1 N N N 0 3.943 -2.615 -2.358
57 HD2 H HD2 N N N 0 6.525 -2.024 -1.797
58 HOP3 H HOP3 N N N 0 -0.132 7.037 1.31