Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GII

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 58


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 5.01 0.125 -0.069
2 N3 N N2 N N N 1 -5.865 2.453 0.561
3 C4 C C1 N N N 0 6.095 2.188 -0.82
4 C5 C C2 N N N 0 3.802 0.916 0.199
5 C6 C C3 N N N 0 2.563 0.056 -0.058
6 C7 C C4 N N N 0 1.304 0.88 0.221
7 C8 C C5 N N N 0 0.064 0.02 -0.036
8 C10 C C6 N N N 0 -2.434 -0.016 -0.014
9 C13 C C7 N Y N 0 -7.255 0.496 0.082
10 C15 C C8 N Y N 0 -6.169 -1.754 -0.375
11 C17 C C9 N N N 0 5.071 -1.056 0.801
12 C1 C C10 R N N 0 7.551 -1.115 0.52
13 C11 C C11 N Y N 0 -4.872 0.211 0.09
14 C12 C C12 N Y N 0 -6.018 1.017 0.236
15 C14 C C13 N Y N 0 -7.395 -0.94 -0.237
16 C16 C C14 N Y N 0 -4.966 -1.163 -0.207
17 C18 C C15 S N N 0 6.261 -1.929 0.396
18 C2 C C16 R N N 0 7.443 0.135 -0.359
19 C3 C C17 R N N 0 6.219 0.948 0.068
20 C9 C C18 N N N 0 -1.194 0.844 0.243
21 N2 N N3 N N N 0 -3.639 0.772 0.253
22 N4 N N4 N N N 0 -8.574 -1.478 -0.392
23 N5 N N5 N N N 1 -8.666 -2.572 -0.634
24 N6 N N6 N N N -1 -8.757 -3.665 -0.876
25 O1 O O1 N N N 0 8.66 -1.906 0.09
26 O2 O O2 N N N 0 8.621 0.929 -0.205
27 O3 O O3 N N N 0 6.033 1.787 -2.191
28 O4 O O4 N N N -1 -4.884 3.148 0.024
29 O5 O O5 N N N 0 -6.71 3.034 1.386
30 O6 O O6 N N N 0 6.331 -3.069 1.256
31 H2 H H2 N N N 0 5.188 2.733 -0.559
32 H3 H H3 N N N 0 6.962 2.831 -0.669
33 H4 H H4 N N N 0 3.806 1.244 1.239
34 H8 H H8 N N N 0 1.308 1.208 1.26
35 H5 H H5 N N N 0 3.783 1.786 -0.457
36 H6 H H6 N N N 0 2.558 -0.273 -1.098
37 H7 H H7 N N N 0 2.581 -0.814 0.598
38 H9 H H9 N N N 0 1.285 1.75 -0.435
39 H10 H H10 N N N 0 0.06 -0.309 -1.076
40 H11 H H11 N N N 0 0.083 -0.85 0.62
41 H12 H H12 N N N 0 -2.438 -0.345 -1.054
42 H13 H H13 N N N 0 -2.415 -0.886 0.642
43 H14 H H14 N N N 0 -8.129 1.12 0.195
44 H15 H H15 N N N 0 -6.234 -2.806 -0.607
45 H16 H H16 N N N 0 5.189 -0.739 1.837
46 H17 H H17 N N N 0 4.149 -1.629 0.7
47 H18 H H18 N N N 0 7.696 -0.818 1.559
48 H19 H H19 N N N 0 -4.065 -1.75 -0.306
49 H20 H H20 N N N 0 6.136 -2.259 -0.636
50 H21 H H21 N N N 0 7.338 -0.162 -1.402
51 H22 H H22 N N N 0 6.332 1.256 1.108
52 H23 H H23 N N N 0 -1.19 1.172 1.283
53 H24 H H24 N N N 0 -1.213 1.714 -0.413
54 H25 H H25 N N N 0 -3.561 1.694 0.547
55 H30 H H30 N N N 0 8.789 -2.716 0.603
56 H31 H H31 N N N 0 9.437 0.475 -0.455
57 H32 H H32 N N N 0 5.953 2.523 -2.812
58 H33 H H33 N N N 0 5.545 -3.631 1.228