Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : GII    

Bonds between two atoms of the molecule

Total Number of Bonds: 59


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 C1 O C sing 1.43 N N
2 O6 C18 O C sing 1.43 N N
3 C18 C1 C C sing 1.53 N N
4 C18 C17 C C sing 1.53 N N
5 O3 C4 O C sing 1.43 N N
6 C1 C2 C C sing 1.53 N N
7 C2 O2 C O sing 1.43 N N
8 C2 C3 C C sing 1.53 N N
9 C17 N1 C N sing 1.47 N N
10 N1 C5 N C sing 1.47 N N
11 N1 C3 N C sing 1.47 N N
12 C5 C6 C C sing 1.53 N N
13 C3 C4 C C sing 1.53 N N
14 N6 N5 N N doub 1.12 N N
15 N4 N5 N N doub 1.12 N N
16 N4 C14 N C sing 1.31 N N
17 C15 C14 C C doub 1.48 N Y
18 C15 C16 C C sing 1.35 N Y
19 C14 C13 C C sing 1.48 N Y
20 C6 C7 C C sing 1.53 N N
21 C16 C11 C C doub 1.41 N Y
22 C7 C8 C C sing 1.53 N N
23 C13 C12 C C doub 1.35 N Y
24 C11 C12 C C sing 1.41 N Y
25 C11 N2 C N sing 1.36 N N
26 C10 N2 C N sing 1.46 N N
27 C10 C9 C C sing 1.53 N N
28 C12 N3 C N sing 1.48 N N
29 C8 C9 C C sing 1.53 N N
30 N3 O5 N O doub 1.32 N N
31 N3 O4 N O sing 1.32 N N
32 C4 H2 C H sing 1.09 N N
33 C4 H3 C H sing 1.09 N N
34 C5 H4 C H sing 1.09 N N
35 C5 H5 C H sing 1.09 N N
36 C6 H6 C H sing 1.09 N N
37 C6 H7 C H sing 1.09 N N
38 C7 H8 C H sing 1.09 N N
39 C7 H9 C H sing 1.09 N N
40 C8 H10 C H sing 1.09 N N
41 C8 H11 C H sing 1.09 N N
42 C10 H12 C H sing 1.09 N N
43 C10 H13 C H sing 1.09 N N
44 C13 H14 C H sing 1.08 N N
45 C15 H15 C H sing 1.08 N N
46 C17 H16 C H sing 1.09 N N
47 C17 H17 C H sing 1.09 N N
48 C1 H18 C H sing 1.09 N N
49 C16 H19 C H sing 1.08 N N
50 C18 H20 C H sing 1.09 N N
51 C2 H21 C H sing 1.09 N N
52 C3 H22 C H sing 1.09 N N
53 C9 H23 C H sing 1.09 N N
54 C9 H24 C H sing 1.09 N N
55 N2 H25 N H sing 0.97 N N
56 O1 H30 O H sing 0.97 N N
57 O2 H31 O H sing 0.97 N N
58 O3 H32 O H sing 0.97 N N
59 O6 H33 O H sing 0.97 N N