Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GIY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 5.339 -0.439 0.467
2 C17 C C2 N N N 0 0.48 -0.53 -1.065
3 C24 C C3 N Y N 0 -6.653 -1.664 0.421
4 C26 C C4 N Y N 0 -4.532 -0.754 1.068
5 C28 C C5 N Y N 0 -7.165 -0.38 0.302
6 C04 C C6 N Y N 0 3.26 -1.824 0.238
7 C05 C C7 S N N 0 -3.575 2.24 -0.072
8 C08 C C8 N Y N 0 -0.915 0.041 -1.061
9 C09 C C9 N Y N 0 -1.365 1.074 -0.311
10 C11 C C10 N N N 0 -2.811 3.511 0.196
11 C12 C C11 N Y N 0 3.722 -1.709 1.488
12 C14 C C12 N Y N 0 4.867 -0.954 1.62
13 C18 C C13 N Y N 0 6.547 0.402 0.339
14 C19 C C14 N N N 0 -4.168 1.716 1.237
15 C23 C C15 N Y N 0 -5.045 0.524 0.949
16 C27 C C16 N Y N 0 -6.36 0.711 0.566
17 C29 C C17 N Y N 0 -5.333 -1.849 0.805
18 C31 C C18 N Y N 0 8.338 1.455 1.349
19 C32 C C19 N Y N 0 6.933 0.875 -0.916
20 C33 C C20 N N N 0 -8.793 -2.474 -0.224
21 C34 C C21 N Y N 0 8.778 1.951 0.137
22 C35 C C22 N Y N 0 8.066 1.661 -1.019
23 N02 N N1 N Y N 0 -2.669 1.235 -0.635
24 N03 N N2 N Y N 0 -2.976 0.354 -1.52
25 N07 N N3 N Y N 0 -1.951 -0.371 -1.801
26 N13 N N4 N N N 0 0.54 -1.678 -0.157
27 N20 N N5 N Y N 0 7.255 0.707 1.422
28 N22 N N6 N N N 0 -2.739 4.467 -0.752
29 O15 O O1 N N N 0 1.987 -3.06 -1.603
30 O16 O O2 N N N 0 1.605 -3.696 0.784
31 O21 O O3 N N N 0 -2.261 3.674 1.264
32 O25 O O4 N N N 0 -2.021 5.661 -0.5
33 O30 O O5 N N N 0 -7.445 -2.739 0.167
34 S01 S S1 N N N 0 1.821 -2.726 -0.232
35 S06 S S2 N Y N 0 4.299 -0.931 -0.864
36 H1 H H1 N N N 0 0.738 -0.851 -2.075
37 H2 H H2 N N N 0 1.185 0.232 -0.735
38 H3 H H3 N N N 0 -3.504 -0.898 1.367
39 H4 H H4 N N N 0 -8.192 -0.234 0.002
40 H5 H H5 N N N 0 -4.378 2.441 -0.781
41 H6 H H6 N N N 0 -0.797 1.653 0.402
42 H7 H H7 N N N 0 3.233 -2.174 2.331
43 H8 H H8 N N N 0 5.348 -0.787 2.573
44 H9 H H9 N N N 0 -3.363 1.421 1.909
45 H10 H H10 N N N 0 -4.764 2.5 1.705
46 H11 H H11 N N N 0 -6.758 1.71 0.472
47 H12 H H12 N N N 0 -4.932 -2.847 0.9
48 H13 H H13 N N N 0 8.888 1.683 2.25
49 H14 H H14 N N N 0 6.355 0.629 -1.795
50 H15 H H15 N N N 0 -9.298 -1.918 0.567
51 H16 H H16 N N N 0 -8.797 -1.885 -1.141
52 H17 H H17 N N N 0 -9.314 -3.416 -0.395
53 H18 H H18 N N N 0 9.667 2.563 0.09
54 H19 H H19 N N N 0 8.389 2.041 -1.977
55 H20 H H20 N N N 0 -0.169 -1.825 0.487
56 H21 H H21 N N N 0 -3.178 4.336 -1.607
57 H22 H H22 N N N 0 -2.026 6.286 -1.238