Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GMO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N N N N 0 -1.417 2.331 1.311
2 CA1 C CA R N N 0 -2.302 1.748 0.294
3 C3 C C N N N 0 -4.572 -1.07 0.917
4 O3 O O N N N 0 -3.799 -1.332 1.808
5 CB1 C CB1 R N N 0 -2.333 2.656 -0.937
6 CB2 C CB2 N N N 0 0.75 -1.943 -0.743
7 CG1 C CG1 N N N 0 -2.735 4.071 -0.517
8 OG1 O OG1 N N N 0 -1.036 2.688 -1.538
9 CG2 C CG2 N Y N 0 2.043 -1.329 -0.421
10 CD1 C CD1 N Y N 0 2.108 0.018 -0.041
11 CD2 C CD2 N Y N 0 3.219 -2.087 -0.488
12 CE1 C CE1 N Y N 0 3.327 0.586 0.259
13 CE2 C CE2 N Y N 0 4.429 -1.502 -0.185
14 CZ C CZ N Y N 0 4.485 -0.169 0.185
15 C1 C C1 N N N 0 -1.788 0.387 -0.099
16 C2 C C2 N N N 0 -1.794 -1.728 -0.72
17 CA2 C CA2 N N N 0 -0.414 -1.235 -0.553
18 CA3 C CA3 N N N 0 -4.051 -0.671 -0.44
19 N2 N N2 N N N 0 -0.533 0.072 -0.169
20 N3 N N3 N N N 0 -2.586 -0.675 -0.421
21 NO N NO N N N 1 5.789 0.451 0.509
22 O2 O O2 N N N 0 -2.145 -2.845 -1.056
23 O40 O O40 N N N 0 6.81 -0.21 0.445
24 ON1 O ON1 N N N -1 5.842 1.622 0.84
25 H H H1 N N N 0 -1.429 1.783 2.158
26 H2 H H2 N N Y 0 -0.477 2.429 0.958
27 HA1 H H4 N N N 0 -3.309 1.652 0.7
28 H11 H H11 N N N 0 -2.011 4.456 0.201
29 H8 H H8 N N N 0 -3.057 2.27 -1.655
30 H9 H H9 N N N 0 0.712 -2.951 -1.128
31 H12 H H12 N N N 0 -2.757 4.718 -1.393
32 H13 H H13 N N N 0 -3.724 4.047 -0.058
33 H14 H H14 N N N 0 -0.341 3.021 -0.955
34 H15 H H15 N N N 0 1.205 0.608 0.017
35 H16 H H16 N N N 0 3.177 -3.127 -0.776
36 H17 H H17 N N N 0 3.379 1.625 0.553
37 H18 H H18 N N N 0 5.337 -2.085 -0.235
38 HA31 H H20 N N N 0 -4.407 -1.379 -1.189
39 HA32 H H21 N N N 0 -4.409 0.329 -0.686
40 OXT O O1 N N Y 0 -5.895 -1.136 1.135
41 HXT H H5 N N Y 0 -6.181 -1.397 2.021