Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : GMO    

Bonds between two atoms of the molecule

Total Number of Bonds: 42


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3 C3 O C doub 1.21 N N
2 C3 CA3 C C sing 1.51 N N
3 CA3 N3 C N sing 1.47 N N
4 N3 C2 N C sing 1.35 N N
5 N3 C1 N C sing 1.37 N N
6 O2 C2 O C doub 1.22 N N
7 CA1 N1 C N sing 1.47 N N
8 CA1 C1 C C sing 1.51 N N
9 CA1 CB1 C C sing 1.53 N N
10 CG1 CB1 C C sing 1.53 N N
11 C2 CA2 C C sing 1.47 N N
12 C1 N2 C N doub 1.3 N N
13 CB1 OG1 C O sing 1.43 N N
14 CA2 N2 C N sing 1.37 N N
15 CA2 CB2 C C doub 1.38 Z N
16 CB2 CG2 C C sing 1.47 N N
17 CG2 CD1 C C doub 1.4 N Y
18 CG2 CD2 C C sing 1.4 N Y
19 CD1 CE1 C C sing 1.38 N Y
20 CD2 CE2 C C doub 1.38 N Y
21 CE1 CZ C C doub 1.38 N Y
22 CE2 CZ C C sing 1.38 N Y
23 CZ NO C N sing 1.48 N N
24 NO ON1 N O sing 1.22 N N
25 NO O40 N O doub 1.22 N N
26 N1 H N H sing 1.01 N N
27 N1 H2 N H sing 1.01 N N
28 CA1 HA1 C H sing 1.09 N N
29 CB1 H8 C H sing 1.09 N N
30 CB2 H9 C H sing 1.08 N N
31 CG1 H11 C H sing 1.09 N N
32 CG1 H12 C H sing 1.09 N N
33 CG1 H13 C H sing 1.09 N N
34 OG1 H14 O H sing 0.97 N N
35 CD1 H15 C H sing 1.08 N N
36 CD2 H16 C H sing 1.08 N N
37 CE1 H17 C H sing 1.08 N N
38 CE2 H18 C H sing 1.08 N N
39 CA3 HA31 C H sing 1.09 N N
40 CA3 HA32 C H sing 1.09 N N
41 C3 OXT C O sing 1.34 N N
42 OXT HXT O H sing 0.97 N N