Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : GVX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 57


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O01 O O1 N N N 0 -6.911 4.488 -1.442
2 C02 C C1 N N N 0 -7.068 3.759 -0.326
3 O03 O O2 N N N 0 -8.176 3.439 0.036
4 C04 C C2 S N N 0 -5.863 3.339 0.475
5 N05 N N1 N N N 0 -6.279 2.993 1.841
6 C06 C C3 N N N 0 -5.211 2.121 -0.183
7 C07 C C4 N N N 0 -3.919 1.771 0.558
8 C08 C C5 N N N 0 -3.277 0.572 -0.091
9 O09 O O3 N N N 0 -3.802 0.048 -1.051
10 N10 N N2 N N N 0 -2.121 0.081 0.396
11 C11 C C6 R N N 0 -1.497 -1.085 -0.234
12 C12 C C7 N N N 0 -2.102 -2.345 0.33
13 O13 O O4 N N N 0 -2.968 -2.276 1.176
14 N14 N N3 N N N 0 -1.679 -3.549 -0.105
15 C15 C C8 N N N 0 -2.267 -4.773 0.444
16 C16 C C9 N N N 0 -1.625 -5.973 -0.204
17 O17 O O5 N N N 0 -2.009 -7.211 0.146
18 O18 O O6 N N N 0 -0.765 -5.821 -1.039
19 C19 C C10 N N N 0 0.007 -1.072 0.045
20 S20 S S1 N N N 0 0.734 0.441 -0.634
21 C21 C C11 N N N 0 2.42 0.199 -0.183
22 S22 S S2 N N N 0 2.885 -1.212 0.667
23 N23 N N4 N N N 0 3.343 1.126 -0.507
24 C24 C C12 N N N 0 4.745 0.925 -0.133
25 C25 C C13 N N N 0 5.577 2.115 -0.616
26 C26 C C14 N Y N 0 7.02 1.908 -0.231
27 C27 C C15 N Y N 0 7.878 1.253 -1.093
28 C28 C C16 N Y N 0 9.201 1.064 -0.739
29 C29 C C17 N Y N 0 9.665 1.529 0.477
30 C30 C C18 N Y N 0 8.806 2.185 1.339
31 C31 C C19 N Y N 0 7.485 2.379 0.983
32 H4 H H4 N N N 0 -6.944 2.234 1.836
33 H1 H H1 N N N 0 -7.714 4.733 -1.922
34 H2 H H2 N N N 0 -5.146 4.16 0.511
35 H3 H H3 N N N 0 -6.654 3.799 2.32
36 H6 H H6 N N N 0 -5.896 1.274 -0.138
37 H7 H H7 N N N 0 -4.983 2.35 -1.224
38 H8 H H8 N N N 0 -3.234 2.618 0.513
39 H9 H H9 N N N 0 -4.147 1.543 1.599
40 H10 H H10 N N N 0 -1.701 0.5 1.164
41 H11 H H11 N N N 0 -1.667 -1.051 -1.31
42 H12 H H12 N N N 0 -0.986 -3.604 -0.781
43 H13 H H13 N N N 0 -2.096 -4.807 1.52
44 H14 H H14 N N N 0 -3.339 -4.783 0.246
45 H15 H H15 N N N 0 -1.569 -7.949 -0.297
46 H16 H H16 N N N 0 0.178 -1.106 1.121
47 H17 H H17 N N N 0 0.471 -1.94 -0.424
48 H18 H H18 N N N 0 3.079 1.926 -0.989
49 H19 H H19 N N N 0 4.823 0.844 0.951
50 H20 H H20 N N N 0 5.117 0.01 -0.594
51 H21 H H21 N N N 0 5.499 2.196 -1.7
52 H22 H H22 N N N 0 5.205 3.03 -0.155
53 H23 H H23 N N N 0 7.516 0.889 -2.043
54 H24 H H24 N N N 0 9.872 0.551 -1.413
55 H25 H H25 N N N 0 10.698 1.38 0.753
56 H27 H H27 N N N 0 6.814 2.892 1.656
57 H26 H H26 N N N 0 9.169 2.548 2.289