Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : H2V

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 52


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C C C N N N 0 -5.54 -1.411 -2.004
2 N N N N N N 0 -1.421 -1.763 -0.262
3 O O O N N N 0 -5.158 1.07 -0.596
4 P P P N N N 0 -5.641 2.321 0.294
5 S S S N N N 0 7.175 0.301 0.885
6 C1 C C1 N N N 0 -4.304 -1.122 -1.15
7 N1 N N1 N N N 0 3.333 -0.563 -0.061
8 O1 O O1 N N N 0 -6.95 1.908 1.136
9 C2 C C2 N N N 0 -3.214 -0.5 -2.024
10 N2 N N2 N N N 0 10.477 1.43 -1.16
11 O2 O O2 N N N 0 -4.558 2.711 1.225
12 C3 C C3 N N N 0 -4.676 -0.149 -0.029
13 O3 O O3 N N N 0 -5.993 3.562 -0.669
14 C4 C C4 S N N 0 -3.788 -2.428 -0.542
15 O4 O O4 N N N 0 -4.812 -3.016 0.262
16 C5 C C5 N N N 0 -2.58 -2.14 0.313
17 O5 O O5 N N N 0 -2.651 -2.249 1.519
18 C6 C C6 N N N 0 -0.225 -1.566 0.56
19 O6 O O6 N N N 0 2.121 -1.116 1.713
20 C7 C C7 N N N 0 0.943 -1.143 -0.332
21 O7 O O7 N N N 0 7.945 0.82 -1.485
22 C8 C C8 N N N 0 2.174 -0.94 0.514
23 C9 C C9 N N N 0 4.529 -0.366 0.761
24 C10 C C10 N N N 0 5.698 0.057 -0.131
25 C11 C C11 N N N 0 8.297 0.754 -0.326
26 C12 C C12 N N N 0 9.722 1.072 0.048
27 H H H N N N 0 -5.304 -2.186 -2.734
28 HA H HA N N N 0 -6.353 -1.751 -1.364
29 HB H HB N N N 0 -5.842 -0.502 -2.525
30 HN H HN N N N 0 -1.379 -1.623 -1.221
31 HN1 H HN1 N N N 0 3.375 -0.423 -1.02
32 HO1 H HO1 N N N 0 -7.701 1.64 0.589
33 H2 H H2 N N N 0 -3.62 0.362 -2.553
34 H2A H H2A N N N 0 -2.382 -0.181 -1.395
35 H2B H H2B N N N 0 -2.862 -1.237 -2.746
36 HN2 H HN2 N N N 0 11.437 1.647 -0.935
37 H3 H H3 N N N 0 -3.796 0.057 0.58
38 H4 H H4 N N N 0 -3.512 -3.116 -1.341
39 H3A H H3A N N N 0 -5.453 -0.593 0.594
40 HO3 H HO3 N N N 0 -6.292 4.353 -0.199
41 HO4 H HO4 N N N 0 -5.107 -2.458 0.994
42 H6 H H6 N N N 0 -0.417 -0.788 1.3
43 H6A H H6A N N N 0 0.024 -2.497 1.069
44 H7 H H7 N N N 0 1.135 -1.921 -1.072
45 H7A H H7A N N N 0 0.694 -0.212 -0.841
46 H9 H H9 N N N 0 4.337 0.412 1.501
47 H9A H H9A N N N 0 4.778 -1.297 1.27
48 H10 H H10 N N N 0 5.448 0.988 -0.64
49 H10A H H10A N N N 0 5.89 -0.721 -0.871
50 H24 H H24 N N N 0 10.425 0.696 -1.85
51 H12 H H12 N N N 0 10.178 0.199 0.516
52 H26 H H26 N N N 0 9.737 1.908 0.747