Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : H2V    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C H C H sing 1.09 N N
2 C HA C H sing 1.09 N N
3 C HB C H sing 1.09 N N
4 N C6 N C sing 1.46 N N
5 N HN N H sing 0.97 N N
6 O C3 O C sing 1.43 N N
7 P O P O sing 1.61 N N
8 P O1 P O sing 1.61 N N
9 P O3 P O sing 1.61 N N
10 C1 C C C sing 1.53 N N
11 C1 C2 C C sing 1.53 N N
12 C1 C4 C C sing 1.53 N N
13 N1 C9 N C sing 1.46 N N
14 N1 HN1 N H sing 0.97 N N
15 O1 HO1 O H sing 0.97 N N
16 C2 H2 C H sing 1.09 N N
17 C2 H2A C H sing 1.09 N N
18 C2 H2B C H sing 1.09 N N
19 N2 HN2 N H sing 1.01 N N
20 O2 P O P doub 1.48 N N
21 C3 C1 C C sing 1.53 N N
22 C3 H3 C H sing 1.09 N N
23 C3 H3A C H sing 1.09 N N
24 O3 HO3 O H sing 0.97 N N
25 C4 O4 C O sing 1.43 N N
26 C4 H4 C H sing 1.09 N N
27 O4 HO4 O H sing 0.97 N N
28 C5 N C N sing 1.35 N N
29 C5 C4 C C sing 1.51 N N
30 O5 C5 O C doub 1.21 N N
31 C6 C7 C C sing 1.53 N N
32 C6 H6 C H sing 1.09 N N
33 C6 H6A C H sing 1.09 N N
34 O6 C8 O C doub 1.21 N N
35 C7 C8 C C sing 1.51 N N
36 C7 H7 C H sing 1.09 N N
37 C7 H7A C H sing 1.09 N N
38 O7 C11 O C doub 1.21 N N
39 C8 N1 C N sing 1.35 N N
40 C9 H9 C H sing 1.09 N N
41 C9 H9A C H sing 1.09 N N
42 C10 S C S sing 1.81 N N
43 C10 C9 C C sing 1.53 N N
44 C10 H10 C H sing 1.09 N N
45 C10 H10A C H sing 1.09 N N
46 C11 S C S sing 1.71 N N
47 C11 C12 C C sing 1.51 N N
48 C12 N2 C N sing 1.47 N N
49 N2 H24 N H sing 1.01 N N
50 C12 H12 C H sing 1.09 N N
51 C12 H26 C H sing 1.09 N N