Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : HMY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 49


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O23 O O23 N N N 0 0.551 0.446 0.962
2 C7 C C7 N N N 0 -0.294 1.147 0.45
3 O8 O O8 N N N 0 -0.031 2.397 0.048
4 C9 C C9 S N N 0 1.301 2.945 0.065
5 C25 C C25 N N N 0 1.908 2.892 1.466
6 C10 C C10 N N N 0 2.194 2.217 -0.941
7 C11 C C11 N N N 0 3.601 2.143 -0.438
8 C12 C C12 N N N 0 4.318 1.06 -0.225
9 C2 C C2 N Y N 0 -1.648 0.593 0.252
10 C1 C C1 N Y N 0 -2.697 1.456 -0.111
11 O20 O O20 N N N 0 -2.471 2.781 -0.293
12 C6 C C6 N Y N 0 -3.977 0.954 -0.282
13 C5 C C5 N Y N 0 -4.215 -0.4 -0.099
14 O21 O O21 N N N 0 -5.469 -0.892 -0.257
15 C22 C C22 N N N 0 -6.493 0.04 -0.612
16 C4 C C4 N Y N 0 -3.171 -1.251 0.241
17 C3 C C3 N Y N 0 -1.898 -0.769 0.407
18 C18 C C18 R N N 0 -0.813 -1.766 0.746
19 O31 O O31 N N N 0 -1.088 -3.091 0.254
20 C17 C C17 R N N 0 0.018 -2.397 -0.354
21 C16 C C16 N N N 0 1.373 -3.045 -0.078
22 C15 C C15 S N N 0 2.41 -2.056 0.428
23 O29 O O29 N N N 0 2.026 -1.534 1.7
24 C14 C C14 S N N 0 2.612 -0.91 -0.567
25 O28 O O28 N N N 0 2.487 -1.413 -1.9
26 C13 C C13 N N N 0 3.984 -0.336 -0.386
27 O24 O O24 N N N 0 4.917 -1.134 -0.374
28 H9 H H9 N N N 0 1.245 4.004 -0.239
29 H25 H H25 N N N 0 1.955 1.856 1.803
30 H25A H H25A N N N 0 2.912 3.313 1.443
31 H25B H H25B N N N 0 1.287 3.469 2.152
32 H10 H H10 N N N 0 1.792 1.244 -1.177
33 H10A H H10A N N N 0 2.194 2.805 -1.875
34 H11 H H11 N N N 0 4.105 3.104 -0.234
35 H12 H H12 N N N 0 5.35 1.26 0.138
36 HO20 H HO20 N N N 0 -2.231 3.018 -1.199
37 H6 H H6 N N N 0 -4.785 1.615 -0.556
38 H22 H H22 N N N 0 -7.444 -0.484 -0.706
39 H22A H H22A N N N 0 -6.573 0.803 0.163
40 H22B H H22B N N N 0 -6.242 0.512 -1.561
41 H4 H H4 N N N 0 -3.361 -2.305 0.382
42 H18 H H18 N N N 0 -0.405 -1.692 1.752
43 H17 H H17 N N N 0 -0.133 -2.049 -1.381
44 H16 H H16 N N N 0 1.237 -3.836 0.67
45 H16A H H16A N N N 0 1.736 -3.519 -0.996
46 H15 H H15 N N N 0 3.369 -2.579 0.549
47 HO29 H HO29 N N N 0 2.653 -0.897 2.07
48 H14 H H14 N N N 0 1.854 -0.158 -0.389
49 HO28 H HO28 N N N 0 2.603 -0.742 -2.587