Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : HMY    

Bonds between two atoms of the molecule

Total Number of Bonds: 51


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O23 C7 O C doub 1.21 N N
2 C7 O8 C O sing 1.34 N N
3 C7 C2 C C sing 1.48 N N
4 O8 C9 O C sing 1.44 N N
5 C9 C25 C C sing 1.53 N N
6 C9 C10 C C sing 1.53 N N
7 C10 C11 C C sing 1.5 N N
8 C11 C12 C C doub 1.32 N N
9 C12 C13 C C sing 1.44 N N
10 C2 C1 C C doub 1.41 N Y
11 C2 C3 C C sing 1.39 N Y
12 C1 O20 C O sing 1.36 N N
13 C1 C6 C C sing 1.39 N Y
14 C6 C5 C C doub 1.39 Z Y
15 C5 O21 C O sing 1.36 N N
16 C5 C4 C C sing 1.39 N Y
17 O21 C22 O C sing 1.43 N N
18 C4 C3 C C doub 1.37 N Y
19 C3 C18 C C sing 1.51 N N
20 C18 O31 C O sing 1.44 N N
21 C18 C17 C C sing 1.52 N N
22 O31 C17 O C sing 1.44 N N
23 C17 C16 C C sing 1.53 N N
24 C16 C15 C C sing 1.52 N N
25 C15 O29 C O sing 1.43 N N
26 C15 C14 C C sing 1.53 N N
27 C14 O28 C O sing 1.43 N N
28 C14 C13 C C sing 1.5 N N
29 C13 O24 C O doub 1.23 N N
30 C9 H9 C H sing 1.1 N N
31 C25 H25 C H sing 1.09 N N
32 C25 H25A C H sing 1.09 N N
33 C25 H25B C H sing 1.09 N N
34 C10 H10 C H sing 1.08 N N
35 C10 H10A C H sing 1.1 N N
36 C11 H11 C H sing 1.1 N N
37 C12 H12 C H sing 1.11 N N
38 O20 HO20 O H sing 0.97 N N
39 C6 H6 C H sing 1.08 N N
40 C22 H22 C H sing 1.09 N N
41 C22 H22A C H sing 1.09 N N
42 C22 H22B C H sing 1.09 N N
43 C4 H4 C H sing 1.08 N N
44 C18 H18 C H sing 1.09 N N
45 C17 H17 C H sing 1.09 N N
46 C16 H16 C H sing 1.1 N N
47 C16 H16A C H sing 1.1 N N
48 C15 H15 C H sing 1.1 N N
49 O29 HO29 O H sing 0.97 N N
50 C14 H14 C H sing 1.08 N N
51 O28 HO28 O H sing 0.97 N N