Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : HN8

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 41


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 S N N 0 -0.732 -0.206 0.537
2 C2 C C2 S N N 0 -1.524 -0.587 -0.736
3 O2 O O1 N N N 0 3.856 1.706 0.815
4 C10 C C3 N N N 0 -2.494 1.442 0.966
5 C11 C C4 N Y N 0 1.522 0.853 0.767
6 C12 C C5 N Y N 0 2.536 -0.883 -1.228
7 C13 C C6 N Y N 0 2.854 0.909 0.382
8 C14 C C7 N Y N 0 3.355 0.045 -0.604
9 C15 C C8 N N N 0 -4.468 2.64 -1.19
10 C16 C C9 N N N 0 5.073 1.067 0.376
11 C17 C C10 N N N 0 -3.01 -0.604 -0.366
12 C3 C C11 R N N 0 -0.863 -1.475 1.41
13 C4 C C12 N N N 0 -1.02 -2.613 0.379
14 C5 C C13 N Y N 0 0.715 -0.084 0.139
15 C6 C C14 N N N 0 0.3 -1.921 -1.543
16 C7 C C15 N N N 0 -1.297 0.989 1.199
17 C8 C C16 N Y N 0 1.197 -0.932 -0.844
18 C9 C C17 S N N 0 -3.444 0.819 -0.013
19 N1 N N1 N N N 0 -1.044 -1.977 -0.956
20 O1 O O2 N N N 0 -3.477 1.61 -1.203
21 O3 O O3 N N N 0 4.671 0.304 -0.78
22 O4 O O4 N N N 0 -2.019 -1.392 2.247
23 H1 H H1 N N N 0 -1.305 0.069 -1.578
24 H5 H H5 N N N 0 -4.428 3.194 -2.128
25 H2 H H2 N N N 0 -2.822 2.317 1.509
26 H3 H H3 N N N 0 1.129 1.513 1.526
27 H4 H H4 N N N 0 2.923 -1.547 -1.987
28 H6 H H6 N N N 0 -5.455 2.193 -1.074
29 H8 H H8 N N N 0 5.818 1.814 0.101
30 H7 H H7 N N N 0 -4.275 3.318 -0.359
31 H9 H H9 N N N 0 5.46 0.408 1.153
32 H10 H H10 N N N 0 -3.593 -0.965 -1.214
33 H11 H H11 N N N 0 -3.166 -1.26 0.491
34 H15 H H15 N N N 0 0.215 -1.639 -2.592
35 H12 H H12 N N N 0 0.034 -1.621 2.011
36 H13 H H13 N N N 0 -0.177 -3.3 0.449
37 H14 H H14 N N N 0 -1.953 -3.149 0.554
38 H16 H H16 N N N 0 0.753 -2.911 -1.48
39 H17 H H17 N N N 0 -0.683 1.514 1.916
40 H18 H H18 N N N 0 -4.442 0.791 0.424
41 H20 H H20 N N N 0 -2.148 -2.163 2.815