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PDBeChem : Atoms of Molecule
Molecule : J6J
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 73
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C13 |
C |
C1 |
N |
Y |
N |
0 |
6.222 |
0.478 |
0.473 |
2 |
C18 |
C |
C2 |
N |
Y |
N |
0 |
7.213 |
-0.093 |
1.276 |
3 |
C17 |
C |
C3 |
N |
Y |
N |
0 |
8.445 |
0.516 |
1.383 |
4 |
C16 |
C |
C4 |
N |
Y |
N |
0 |
8.701 |
1.694 |
0.698 |
5 |
C15 |
C |
C5 |
N |
Y |
N |
0 |
7.721 |
2.266 |
-0.099 |
6 |
C20 |
C |
C6 |
N |
Y |
N |
0 |
-0.743 |
-1.938 |
-0.791 |
7 |
C21 |
C |
C7 |
N |
N |
N |
0 |
3.397 |
3.895 |
-1.533 |
8 |
C22 |
C |
C8 |
N |
Y |
N |
0 |
-1.19 |
-3.138 |
-1.346 |
9 |
C23 |
C |
C9 |
N |
Y |
N |
0 |
-2.481 |
-3.248 |
-1.817 |
10 |
C24 |
C |
C10 |
N |
Y |
N |
0 |
-3.346 |
-2.166 |
-1.742 |
11 |
C34 |
C |
C11 |
N |
Y |
N |
0 |
-5.447 |
2.222 |
0.605 |
12 |
C27 |
C |
C12 |
N |
N |
N |
0 |
-3.823 |
0.198 |
-1.105 |
13 |
C33 |
C |
C13 |
N |
N |
N |
0 |
-4.661 |
3.332 |
-1.607 |
14 |
O1 |
O |
O1 |
N |
Y |
N |
0 |
4.533 |
-1.3 |
0.976 |
15 |
C2 |
C |
C14 |
N |
Y |
N |
0 |
4.9 |
-0.166 |
0.358 |
16 |
C3 |
C |
C15 |
N |
Y |
N |
0 |
3.843 |
0.306 |
-0.403 |
17 |
C4 |
C |
C16 |
N |
Y |
N |
0 |
2.749 |
-0.665 |
-0.2 |
18 |
C5 |
C |
C17 |
N |
Y |
N |
0 |
3.261 |
-1.637 |
0.674 |
19 |
C6 |
C |
C18 |
N |
Y |
N |
0 |
1.447 |
-0.76 |
-0.678 |
20 |
C7 |
C |
C19 |
N |
Y |
N |
0 |
0.648 |
-1.827 |
-0.287 |
21 |
C8 |
C |
C20 |
N |
Y |
N |
0 |
1.159 |
-2.799 |
0.586 |
22 |
C9 |
C |
C21 |
N |
Y |
N |
0 |
2.455 |
-2.701 |
1.061 |
23 |
C10 |
C |
C22 |
N |
N |
N |
0 |
3.816 |
1.514 |
-1.234 |
24 |
O11 |
O |
O2 |
N |
N |
N |
0 |
4.149 |
1.455 |
-2.403 |
25 |
N12 |
N |
N1 |
N |
N |
N |
0 |
3.424 |
2.689 |
-0.703 |
26 |
C14 |
C |
C23 |
N |
Y |
N |
0 |
6.486 |
1.666 |
-0.215 |
27 |
F19 |
F |
F1 |
N |
N |
N |
0 |
9.91 |
2.287 |
0.808 |
28 |
C25 |
C |
C24 |
N |
Y |
N |
0 |
-2.907 |
-0.956 |
-1.187 |
29 |
C26 |
C |
C25 |
N |
Y |
N |
0 |
-1.599 |
-0.845 |
-0.715 |
30 |
N28 |
N |
N2 |
N |
N |
N |
0 |
-3.398 |
1.36 |
-0.57 |
31 |
O29 |
O |
O3 |
N |
N |
N |
0 |
-4.962 |
0.1 |
-1.52 |
32 |
N30 |
N |
N3 |
N |
N |
N |
0 |
0.355 |
-3.87 |
0.979 |
33 |
C31 |
C |
C26 |
N |
N |
N |
0 |
-4.338 |
2.468 |
-0.386 |
34 |
C32 |
C |
C27 |
N |
N |
N |
0 |
-3.783 |
3.89 |
-0.485 |
35 |
N35 |
N |
N4 |
N |
Y |
N |
0 |
-5.233 |
1.405 |
1.616 |
36 |
C36 |
C |
C28 |
N |
Y |
N |
0 |
-6.182 |
1.164 |
2.506 |
37 |
C37 |
C |
C29 |
N |
Y |
N |
0 |
-7.415 |
1.786 |
2.363 |
38 |
C38 |
C |
C30 |
N |
Y |
N |
0 |
-7.601 |
2.64 |
1.285 |
39 |
N39 |
N |
N5 |
N |
Y |
N |
0 |
-6.602 |
2.835 |
0.439 |
40 |
C40 |
C |
C31 |
N |
N |
N |
0 |
0.885 |
-4.887 |
1.891 |
41 |
C41 |
C |
C32 |
N |
N |
N |
0 |
-0.191 |
-5.942 |
2.158 |
42 |
F42 |
F |
F2 |
N |
N |
N |
0 |
-8.41 |
1.561 |
3.248 |
43 |
O43 |
O |
O4 |
N |
N |
N |
0 |
-4.615 |
-2.278 |
-2.207 |
44 |
C44 |
C |
C33 |
N |
N |
N |
0 |
-4.994 |
-3.54 |
-2.761 |
45 |
H51 |
H |
H1 |
N |
N |
N |
0 |
7.015 |
-1.011 |
1.81 |
46 |
H50 |
H |
H2 |
N |
N |
N |
0 |
9.212 |
0.076 |
2.003 |
47 |
H49 |
H |
H3 |
N |
N |
N |
0 |
7.926 |
3.184 |
-0.63 |
48 |
H54 |
H |
H4 |
N |
N |
N |
0 |
4.399 |
4.099 |
-1.911 |
49 |
H52 |
H |
H5 |
N |
N |
N |
0 |
2.717 |
3.745 |
-2.371 |
50 |
H53 |
H |
H6 |
N |
N |
N |
0 |
3.055 |
4.74 |
-0.935 |
51 |
H55 |
H |
H7 |
N |
N |
N |
0 |
-0.521 |
-3.984 |
-1.408 |
52 |
H56 |
H |
H8 |
N |
N |
N |
0 |
-2.82 |
-4.18 |
-2.245 |
53 |
H62 |
H |
H9 |
N |
N |
N |
0 |
-4.173 |
3.075 |
-2.547 |
54 |
H63 |
H |
H10 |
N |
N |
N |
0 |
-5.675 |
3.722 |
-1.694 |
55 |
H45 |
H |
H11 |
N |
N |
N |
0 |
1.059 |
-0.009 |
-1.35 |
56 |
H46 |
H |
H12 |
N |
N |
N |
0 |
2.841 |
-3.454 |
1.732 |
57 |
H47 |
H |
H13 |
N |
N |
N |
0 |
3.159 |
2.735 |
0.229 |
58 |
H48 |
H |
H14 |
N |
N |
N |
0 |
5.724 |
2.112 |
-0.837 |
59 |
H57 |
H |
H15 |
N |
N |
N |
0 |
-1.254 |
0.084 |
-0.286 |
60 |
H58 |
H |
H16 |
N |
N |
N |
0 |
-2.47 |
1.462 |
-0.308 |
61 |
H59 |
H |
H17 |
N |
N |
N |
0 |
-0.554 |
-3.941 |
0.648 |
62 |
H60 |
H |
H18 |
N |
N |
N |
0 |
-2.717 |
4.001 |
-0.688 |
63 |
H61 |
H |
H19 |
N |
N |
N |
0 |
-4.219 |
4.648 |
0.166 |
64 |
H64 |
H |
H20 |
N |
N |
N |
0 |
-6.0 |
0.493 |
3.332 |
65 |
H65 |
H |
H21 |
N |
N |
N |
0 |
-8.546 |
3.142 |
1.14 |
66 |
H67 |
H |
H22 |
N |
N |
N |
0 |
1.755 |
-5.363 |
1.439 |
67 |
H66 |
H |
H23 |
N |
N |
N |
0 |
1.175 |
-4.417 |
2.831 |
68 |
H69 |
H |
H24 |
N |
N |
N |
0 |
-1.061 |
-5.466 |
2.611 |
69 |
H68 |
H |
H25 |
N |
N |
N |
0 |
-0.481 |
-6.412 |
1.219 |
70 |
H70 |
H |
H26 |
N |
N |
N |
0 |
0.203 |
-6.699 |
2.837 |
71 |
H71 |
H |
H27 |
N |
N |
N |
0 |
-4.35 |
-3.773 |
-3.609 |
72 |
H72 |
H |
H28 |
N |
N |
N |
0 |
-4.891 |
-4.315 |
-2.002 |
73 |
H73 |
H |
H29 |
N |
N |
N |
0 |
-6.031 |
-3.493 |
-3.094 |
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