Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : J8T

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 28


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N N N 0 -0.095 -0.1 0.232
2 C5 C C2 N N N 0 -1.202 -0.966 -0.373
3 C6 C C3 N N N 0 -1.221 -0.782 -1.892
4 C7 C C4 N N N 0 -0.939 -2.436 -0.04
5 O3 O O1 N N N 0 2.548 1.743 -0.381
6 O4 O O2 N N N 0 2.717 0.155 1.573
7 O5 O O3 N N N 0 1.167 -0.493 -0.311
8 P1 P P1 N N N 0 2.556 0.208 0.103
9 O6 O O4 N N N 0 -2.581 -0.835 1.607
10 O7 O O5 N N N 0 -2.733 1.69 0.945
11 C8 C C5 R N N 0 -2.553 -0.545 0.208
12 C9 C C6 N N N 0 -2.752 0.934 -0.003
13 N2 N N1 N N N 0 -2.952 1.416 -1.245
14 H1 H H1 N N N 0 -0.282 0.947 -0.005
15 H2 H H2 N N N 0 -0.081 -0.231 1.314
16 H3 H H3 N N N 0 -0.305 -1.191 -2.318
17 H4 H H4 N N N 0 -2.081 -1.305 -2.31
18 H5 H H5 N N N 0 -1.29 0.279 -2.129
19 H6 H H6 N N N 0 -1.005 -2.582 1.038
20 H7 H H7 N N N 0 -1.681 -3.06 -0.538
21 H8 H H8 N N N 0 0.058 -2.713 -0.383
22 H9 H H9 N N N 0 2.446 1.854 -1.336
23 H11 H H11 N N N 0 -1.897 -0.379 2.117
24 H12 H H12 N N N 0 -3.351 -1.094 -0.292
25 H13 H H13 N N N 0 -3.009 2.374 -1.39
26 H14 H H14 N N N 0 -3.04 0.806 -1.994
27 O1 O O6 N N Y 0 3.78 -0.569 -0.599
28 H10 H H10 N N N 0 4.649 -0.201 -0.393