Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : J8T    

Bonds between two atoms of the molecule

Total Number of Bonds: 27


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3 P1 O P sing 1.61 N N
2 P1 O4 P O doub 1.48 N N
3 P1 O5 P O sing 1.61 N N
4 O5 C4 O C sing 1.43 N N
5 C4 C5 C C sing 1.53 N N
6 C7 C5 C C sing 1.53 N N
7 C5 C8 C C sing 1.53 N N
8 C5 C6 C C sing 1.53 N N
9 C8 O6 C O sing 1.43 N N
10 C8 C9 C C sing 1.51 N N
11 O7 C9 O C doub 1.21 N N
12 C9 N2 C N sing 1.35 N N
13 C4 H1 C H sing 1.09 N N
14 C4 H2 C H sing 1.09 N N
15 C6 H3 C H sing 1.09 N N
16 C6 H4 C H sing 1.09 N N
17 C6 H5 C H sing 1.09 N N
18 C7 H6 C H sing 1.09 N N
19 C7 H7 C H sing 1.09 N N
20 C7 H8 C H sing 1.09 N N
21 O3 H9 O H sing 0.97 N N
22 O6 H11 O H sing 0.97 N N
23 C8 H12 C H sing 1.09 N N
24 N2 H13 N H sing 0.97 N N
25 N2 H14 N H sing 0.97 N N
26 P1 O1 P O sing 1.61 N N
27 O1 H10 O H sing 0.97 N N