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PDBeChem : Atoms of Molecule
Molecule : JC8
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 40
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
C13 |
C |
C1 |
S |
N |
N |
0 |
-5.45 |
-0.195 |
0.693 |
2 |
C14 |
C |
C2 |
N |
N |
N |
0 |
-5.991 |
-1.561 |
0.176 |
3 |
C11 |
C |
C3 |
R |
N |
N |
0 |
-3.149 |
-0.836 |
0.194 |
4 |
F |
F |
F1 |
N |
N |
N |
0 |
0.999 |
2.898 |
-0.053 |
5 |
C10 |
C |
C4 |
N |
Y |
N |
0 |
0.014 |
1.975 |
0.006 |
6 |
C6 |
C |
C5 |
N |
Y |
N |
0 |
0.339 |
0.617 |
0.051 |
7 |
C3 |
C |
C6 |
N |
Y |
N |
0 |
1.754 |
0.179 |
0.033 |
8 |
N1 |
N |
N1 |
N |
Y |
N |
0 |
2.716 |
1.08 |
-0.135 |
9 |
C2 |
C |
C7 |
N |
Y |
N |
0 |
3.986 |
0.739 |
-0.158 |
10 |
C4 |
C |
C8 |
N |
Y |
N |
0 |
2.059 |
-1.172 |
0.199 |
11 |
C5 |
C |
C9 |
N |
Y |
N |
0 |
3.381 |
-1.571 |
0.182 |
12 |
C1 |
C |
C10 |
N |
Y |
N |
0 |
4.37 |
-0.595 |
-0.003 |
13 |
C |
C |
C11 |
N |
N |
N |
0 |
5.798 |
-0.971 |
-0.03 |
14 |
O |
O |
O1 |
N |
N |
N |
0 |
6.122 |
-2.134 |
0.109 |
15 |
N |
N |
N2 |
N |
N |
N |
0 |
6.741 |
-0.025 |
-0.209 |
16 |
N2 |
N |
N3 |
N |
Y |
N |
0 |
-1.246 |
2.364 |
0.028 |
17 |
C9 |
C |
C12 |
N |
Y |
N |
0 |
-2.24 |
1.498 |
0.086 |
18 |
C8 |
C |
C13 |
N |
Y |
N |
0 |
-2.0 |
0.137 |
0.127 |
19 |
C7 |
C |
C14 |
N |
Y |
N |
0 |
-0.694 |
-0.322 |
0.113 |
20 |
C16 |
C |
C15 |
R |
N |
N |
0 |
-4.083 |
-0.678 |
-1.062 |
21 |
C15 |
C |
C16 |
N |
N |
N |
0 |
-5.061 |
-1.89 |
-1.018 |
22 |
N3 |
N |
N4 |
N |
N |
N |
0 |
-4.982 |
0.436 |
-0.592 |
23 |
C12 |
C |
C17 |
N |
N |
N |
0 |
-4.088 |
-0.513 |
1.382 |
24 |
H1 |
H |
H1 |
N |
N |
N |
0 |
-6.15 |
0.395 |
1.285 |
25 |
H2 |
H |
H2 |
N |
N |
N |
0 |
-5.907 |
-2.325 |
0.949 |
26 |
H3 |
H |
H3 |
N |
N |
N |
0 |
-7.024 |
-1.464 |
-0.158 |
27 |
H4 |
H |
H4 |
N |
N |
N |
0 |
-2.78 |
-1.859 |
0.271 |
28 |
H5 |
H |
H5 |
N |
N |
N |
0 |
4.741 |
1.5 |
-0.297 |
29 |
H6 |
H |
H6 |
N |
N |
N |
0 |
1.271 |
-1.897 |
0.34 |
30 |
H7 |
H |
H7 |
N |
N |
N |
0 |
3.647 |
-2.61 |
0.308 |
31 |
H8 |
H |
H8 |
N |
N |
N |
0 |
6.482 |
0.904 |
-0.32 |
32 |
H9 |
H |
H9 |
N |
N |
N |
0 |
7.678 |
-0.272 |
-0.226 |
33 |
H10 |
H |
H10 |
N |
N |
N |
0 |
-3.258 |
1.859 |
0.102 |
34 |
H11 |
H |
H11 |
N |
N |
N |
0 |
-0.479 |
-1.38 |
0.148 |
35 |
H12 |
H |
H12 |
N |
N |
N |
0 |
-3.572 |
-0.517 |
-2.012 |
36 |
H13 |
H |
H13 |
N |
N |
N |
0 |
-4.516 |
-2.816 |
-0.837 |
37 |
H14 |
H |
H14 |
N |
N |
N |
0 |
-5.634 |
-1.955 |
-1.944 |
38 |
H15 |
H |
H15 |
N |
N |
N |
0 |
-5.751 |
0.561 |
-1.234 |
39 |
H17 |
H |
H17 |
N |
N |
N |
0 |
-3.729 |
0.358 |
1.929 |
40 |
H18 |
H |
H18 |
N |
N |
N |
0 |
-4.178 |
-1.374 |
2.045 |
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