Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
JC8
Bonds between two atoms of the molecule
Total Number of Bonds: 43
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
N
C
N
C
sing
1.35
N
N
2
O
C
O
C
doub
1.22
N
N
3
C
C1
C
C
sing
1.48
N
N
4
C1
C5
C
C
doub
1.4
N
Y
5
C1
C2
C
C
sing
1.4
N
Y
6
C5
C4
C
C
sing
1.38
N
Y
7
C2
N1
C
N
doub
1.32
N
Y
8
N1
C3
N
C
sing
1.33
N
Y
9
C4
C3
C
C
doub
1.39
N
Y
10
C3
C6
C
C
sing
1.48
N
N
11
C12
C11
C
C
sing
1.55
N
N
12
C12
C13
C
C
sing
1.56
N
N
13
C7
C6
C
C
doub
1.4
N
Y
14
C7
C8
C
C
sing
1.38
N
Y
15
C6
C10
C
C
sing
1.4
N
Y
16
C14
C13
C
C
sing
1.56
N
N
17
C14
C15
C
C
sing
1.55
N
N
18
C11
C8
C
C
sing
1.51
N
N
19
C11
C16
C
C
sing
1.57
N
N
20
C13
N3
C
N
sing
1.51
N
N
21
C8
C9
C
C
doub
1.38
N
Y
22
C15
C16
C
C
sing
1.56
N
N
23
C10
F
C
F
sing
1.35
N
N
24
C10
N2
C
N
doub
1.32
N
Y
25
C16
N3
C
N
sing
1.51
N
N
26
C9
N2
C
N
sing
1.32
N
Y
27
C13
H1
C
H
sing
1.09
N
N
28
C14
H2
C
H
sing
1.09
N
N
29
C14
H3
C
H
sing
1.09
N
N
30
C11
H4
C
H
sing
1.09
N
N
31
C2
H5
C
H
sing
1.08
N
N
32
C4
H6
C
H
sing
1.08
N
N
33
C5
H7
C
H
sing
1.08
N
N
34
N
H8
N
H
sing
0.97
N
N
35
N
H9
N
H
sing
0.97
N
N
36
C9
H10
C
H
sing
1.08
N
N
37
C7
H11
C
H
sing
1.08
N
N
38
C16
H12
C
H
sing
1.09
N
N
39
C15
H13
C
H
sing
1.09
N
N
40
C15
H14
C
H
sing
1.09
N
N
41
N3
H15
N
H
sing
1.01
N
N
42
C12
H17
C
H
sing
1.09
N
N
43
C12
H18
C
H
sing
1.09
N
N