Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JMH

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 38


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N N N 0 -2.083 0.035 0.009
2 C2 C C1 N N N 0 -3.232 0.032 0.702
3 C5 C C2 N N N 0 -2.786 1.847 -1.32
4 C1' C C3 R N N 0 -1.051 -0.953 0.335
5 C2' C C4 R N N 0 -0.83 -1.923 -0.853
6 C3' C C5 S N N 0 0.619 -2.411 -0.608
7 C4 C C6 N N N 0 -4.043 1.857 -0.56
8 C4' C C7 R N N 0 1.234 -1.328 0.299
9 C5' C C8 N N N 0 2.468 -0.725 -0.374
10 C6 C C9 N N N 0 -1.85 0.934 -1.001
11 C31 C C10 N N N 0 -5.452 0.891 1.226
12 N3 N N2 N N N 0 -4.214 0.917 0.444
13 N4 N N3 N N N 0 -4.984 2.725 -0.832
14 O2 O O1 N N N 0 -3.391 -0.789 1.585
15 O2' O O2 N N N 0 -1.752 -3.014 -0.799
16 O3' O O3 N N N 0 0.614 -3.677 0.056
17 O4' O O4 N N N 0 0.234 -0.313 0.491
18 O5' O O5 N N N 0 3.099 0.193 0.521
19 OP1 O O6 N N N 0 5.49 0.069 -0.277
20 OP2 O O7 N N N 0 4.109 2.029 -1.067
21 P P P1 N N N 0 4.43 1.014 0.141
22 OP3 O O8 N N Y 0 4.931 1.848 1.424
23 H1 H H1 N N N 0 -2.614 2.562 -2.111
24 H2 H H2 N N N 0 -1.32 -1.504 1.236
25 H3 H H3 N N N 0 -0.908 -1.398 -1.805
26 H4 H H4 N N N 0 1.164 -2.478 -1.549
27 H6 H H6 N N N 0 1.51 -1.762 1.26
28 H7 H H7 N N N 0 3.168 -1.521 -0.629
29 H8 H H8 N N N 0 2.168 -0.201 -1.281
30 H9 H H9 N N N 0 -0.915 0.91 -1.54
31 H10 H H10 N N N 0 -6.287 0.631 0.576
32 H11 H H11 N N N 0 -5.365 0.149 2.02
33 H12 H H12 N N N 0 -5.625 1.874 1.665
34 H13 H H13 N N N 0 -5.838 2.674 -0.375
35 H16 H H16 N N N 0 -1.653 -3.649 -1.522
36 H17 H H17 N N N 0 0.186 -4.383 -0.446
37 H18 H H18 N N N 0 3.422 2.678 -0.862
38 H19 H H19 N N N 0 5.732 2.368 1.268