Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JVB

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 32


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 -0.821 0.165 0.109
2 N12 N N1 N N N 0 -1.885 0.983 0.24
3 C13 C C2 N Y N 0 -3.181 0.47 0.113
4 C15 C C3 N Y N 0 -4.777 -1.276 0.416
5 C01 C C4 N N N 0 3.415 -2.401 -0.312
6 C02 C C5 N Y N 0 3.813 -0.956 -0.15
7 C03 C C6 N Y N 0 5.148 -0.603 -0.144
8 C04 C C7 N Y N 0 5.514 0.722 0.005
9 C05 C C8 N Y N 0 4.544 1.697 0.148
10 C06 C C9 N Y N 0 3.207 1.349 0.142
11 C07 C C10 N Y N 0 2.838 0.021 -0.012
12 C09 C C11 N N N 0 0.574 0.734 0.14
13 C14 C C12 N Y N 0 -3.48 -0.814 0.563
14 C16 C C13 N Y N 0 -5.725 -0.455 -0.167
15 C18 C C14 N Y N 0 -4.188 1.236 -0.457
16 N17 N N2 N Y N 0 -5.411 0.757 -0.577
17 O08 O O1 N N N 0 1.523 -0.323 -0.018
18 O11 O O2 N N N 0 -0.987 -1.028 -0.03
19 H1 H H1 N N N 0 -1.752 1.926 0.423
20 H2 H H2 N N N 0 -5.045 -2.267 0.753
21 H3 H H3 N N N 0 3.347 -2.871 0.669
22 H4 H H4 N N N 0 2.447 -2.457 -0.81
23 H5 H H5 N N N 0 4.164 -2.918 -0.911
24 H6 H H6 N N N 0 5.907 -1.363 -0.255
25 H7 H H7 N N N 0 6.558 0.996 0.01
26 H8 H H8 N N N 0 4.832 2.732 0.263
27 H9 H H9 N N N 0 2.45 2.112 0.254
28 H10 H H10 N N N 0 0.692 1.452 -0.671
29 H11 H H11 N N N 0 0.742 1.233 1.094
30 H12 H H12 N N N 0 -2.719 -1.433 1.015
31 H13 H H13 N N N 0 -6.738 -0.811 -0.283
32 H14 H H14 N N N 0 -3.969 2.235 -0.805