Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : JVB    

Bonds between two atoms of the molecule

Total Number of Bonds: 33


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C05 C04 C C doub 1.38 N Y
2 C05 C06 C C sing 1.38 N Y
3 C04 C03 C C sing 1.38 N Y
4 C06 C07 C C doub 1.39 N Y
5 C03 C02 C C doub 1.38 N Y
6 C07 C02 C C sing 1.39 N Y
7 C07 O08 C O sing 1.36 N N
8 C02 C01 C C sing 1.51 N N
9 C09 O08 C O sing 1.43 N N
10 C09 C10 C C sing 1.51 N N
11 O11 C10 O C doub 1.21 N N
12 C10 N12 C N sing 1.35 N N
13 N12 C13 N C sing 1.4 N N
14 C18 C13 C C doub 1.39 N Y
15 C18 N17 C N sing 1.32 N Y
16 C13 C14 C C sing 1.39 N Y
17 N17 C16 N C doub 1.32 N Y
18 C14 C15 C C doub 1.38 N Y
19 C16 C15 C C sing 1.38 N Y
20 N12 H1 N H sing 0.97 N N
21 C15 H2 C H sing 1.08 N N
22 C01 H3 C H sing 1.09 N N
23 C01 H4 C H sing 1.09 N N
24 C01 H5 C H sing 1.09 N N
25 C03 H6 C H sing 1.08 N N
26 C04 H7 C H sing 1.08 N N
27 C05 H8 C H sing 1.08 N N
28 C06 H9 C H sing 1.08 N N
29 C09 H10 C H sing 1.09 N N
30 C09 H11 C H sing 1.09 N N
31 C14 H12 C H sing 1.08 N N
32 C16 H13 C H sing 1.08 N N
33 C18 H14 C H sing 1.08 N N