Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : JYO

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 50


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 -2.034 1.903 -0.057
2 C6 C C2 S N N 0 -3.773 0.235 -0.662
3 C7 C C3 N N N 0 -4.39 1.41 -1.429
4 C10 C C4 N Y N 0 1.158 0.185 0.472
5 C15 C C5 N Y N 0 1.405 -0.867 1.352
6 C17 C C6 N Y N 0 3.758 -0.632 0.976
7 C26 C C7 N Y N 0 -2.123 -2.487 0.407
8 C1 C C8 N Y N 0 -1.304 -0.2 -0.144
9 C2 C C9 N Y N 0 -0.721 1.944 0.254
10 C3 C C10 N Y N 0 -0.234 0.621 0.206
11 C9 C C11 N N N 0 -3.036 2.979 -0.157
12 C11 C C12 N N N 0 -4.592 -0.042 0.6
13 C12 C C13 N N N 0 -5.985 -0.536 0.205
14 C16 C C14 N Y N 0 2.702 -1.27 1.599
15 C18 C C15 N Y N 0 3.521 0.423 0.105
16 C25 C C16 N Y N 0 -1.255 -1.666 -0.316
17 F24 F F1 N N N 0 5.972 -0.781 -0.577
18 C21 C C17 N N N 0 5.874 0.564 -0.206
19 F22 F F2 N N N 0 6.114 0.688 1.167
20 F23 F F3 N N N 0 6.82 1.313 -0.914
21 O20 O O1 N N N 0 4.563 1.047 -0.505
22 C19 C C18 N Y N 0 2.223 0.831 -0.152
23 O14 O O2 N N N 0 -2.816 4.204 0.376
24 C27 C C19 N Y N 0 -2.068 -3.855 0.245
25 N8 N N1 N N N 0 -4.147 2.694 -0.786
26 N13 N N2 N N N 0 -6.772 -0.802 1.417
27 N5 N N3 N Y N 0 -2.396 0.584 -0.298
28 C28 C C20 N Y N 0 -1.154 -4.416 -0.63
29 C29 C C21 N Y N 0 -0.291 -3.608 -1.35
30 C30 C C22 N Y N 0 -0.339 -2.237 -1.203
31 H6 H H1 N N N 0 -3.765 -0.651 -1.297
32 H72 H H2 N N N 0 -3.973 1.431 -2.436
33 H71 H H3 N N N 0 -5.467 1.255 -1.5
34 H15 H H4 N N N 0 0.582 -1.367 1.841
35 H17 H H5 N N N 0 4.771 -0.951 1.173
36 H26 H H6 N N N 0 -2.834 -2.051 1.094
37 H2 H H7 N N N 0 -0.148 2.828 0.494
38 H112 H H8 N N N 0 -4.092 -0.803 1.198
39 H111 H H9 N N N 0 -4.683 0.876 1.182
40 H122 H H10 N N N 0 -6.485 0.226 -0.393
41 H121 H H11 N N N 0 -5.894 -1.453 -0.377
42 H16 H H12 N N N 0 2.892 -2.086 2.281
43 HN11 H H16 N N N 0 -7.697 -1.13 1.183
44 H19 H H13 N N N 0 2.037 1.652 -0.829
45 HO14 H H14 N N N 0 -3.546 4.826 0.247
46 HN12 H H15 N N N 0 -6.817 0.017 2.006
47 H27 H H18 N N N 0 -2.738 -4.491 0.804
48 H28 H H19 N N N 0 -1.111 -5.488 -0.749
49 H29 H H20 N N N 0 0.42 -4.052 -2.031
50 H30 H H21 N N N 0 0.335 -1.609 -1.765