Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : JYO    

Bonds between two atoms of the molecule

Total Number of Bonds: 53


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C28 C29 C C doub 1.38 N Y
2 C28 C27 C C sing 1.38 N Y
3 N13 C12 N C sing 1.47 N N
4 C29 C30 C C sing 1.38 N Y
5 C27 C26 C C doub 1.38 N Y
6 C12 C11 C C sing 1.53 N N
7 C30 C25 C C doub 1.4 N Y
8 C26 C25 C C sing 1.4 N Y
9 C25 C1 C C sing 1.48 N N
10 C11 C6 C C sing 1.53 N N
11 F22 C21 F C sing 1.4 N N
12 C6 C7 C C sing 1.53 N N
13 C6 N5 C N sing 1.47 N N
14 F24 C21 F C sing 1.4 N N
15 C7 N8 C N sing 1.46 N N
16 C21 F23 C F sing 1.4 N N
17 C21 O20 C O sing 1.43 N N
18 C1 N5 C N sing 1.35 N Y
19 C1 C3 C C doub 1.39 N Y
20 N5 C4 N C sing 1.39 N Y
21 O20 C18 O C sing 1.36 N N
22 N8 C9 N C doub 1.31 N N
23 C19 C18 C C doub 1.38 N Y
24 C19 C10 C C sing 1.39 N Y
25 C4 C9 C C sing 1.47 N N
26 C4 C2 C C doub 1.35 N Y
27 C3 C10 C C sing 1.48 N N
28 C3 C2 C C sing 1.41 N Y
29 C18 C17 C C sing 1.39 N Y
30 C9 O14 C O sing 1.35 N N
31 C10 C15 C C doub 1.39 N Y
32 C17 C16 C C doub 1.38 N Y
33 C15 C16 C C sing 1.38 N Y
34 C6 H6 C H sing 1.09 N N
35 C7 H72 C H sing 1.09 N N
36 C7 H71 C H sing 1.09 N N
37 C15 H15 C H sing 1.08 N N
38 C17 H17 C H sing 1.08 N N
39 C26 H26 C H sing 1.08 N N
40 C2 H2 C H sing 1.08 N N
41 C11 H112 C H sing 1.09 N N
42 C11 H111 C H sing 1.09 N N
43 C12 H122 C H sing 1.09 N N
44 C12 H121 C H sing 1.09 N N
45 C16 H16 C H sing 1.08 N N
46 C19 H19 C H sing 1.08 N N
47 O14 HO14 O H sing 0.97 N N
48 N13 HN12 N H sing 1.01 N N
49 N13 HN11 N H sing 1.01 N N
50 C27 H27 C H sing 1.08 N N
51 C28 H28 C H sing 1.08 N N
52 C29 H29 C H sing 1.08 N N
53 C30 H30 C H sing 1.08 N N