Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : K5M

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N Y N 0 2.747 0.449 -0.03
2 C13 C C2 N Y N 0 5.264 1.56 -0.321
3 C21 C C3 N N N 0 -6.965 0.994 0.856
4 C22 C C4 S N N 0 -8.231 0.231 0.411
5 C24 C C5 N N N 0 -8.288 -1.277 0.667
6 C06 C C9 N N N 0 -2.096 0.955 0.126
7 C02 C C6 N N N 0 -6.282 -0.512 -0.89
8 C03 C C7 S N N 0 -5.804 0.056 0.442
9 C05 C C8 N N N 0 -3.374 0.177 0.307
10 C07 C C10 N N N 0 -0.902 0.003 0.214
11 C08 C C11 N N N 0 0.396 0.793 0.031
12 C11 C C12 N Y N 0 2.884 1.813 -0.245
13 C19 C C16 N Y N 0 3.875 -0.356 0.045
14 C12 C C13 N Y N 0 4.142 2.365 -0.39
15 C14 C C14 N Y N 0 5.13 0.202 -0.101
16 C16 C C15 N N N 0 7.02 -0.811 1.741
17 C23 C C17 S N N 0 -7.78 -0.729 -0.705
18 N04 N N1 N N N 0 -4.561 0.812 0.266
19 O01 O O1 N N N 0 -5.62 -0.738 -1.874
20 O09 O O2 N N N 0 1.511 -0.097 0.113
21 O17 O O3 N N N 0 6.099 -2.107 -0.402
22 O18 O O4 N N N 0 7.535 -0.129 -0.786
23 O20 O O5 N N N 0 -3.333 -1.022 0.488
24 S15 S S1 N N N 0 6.563 -0.821 -0.014
25 H131 H H1 N N N 0 6.246 1.994 -0.435
26 H212 H H2 N N N 0 -6.89 1.949 0.337
27 H211 H H3 N N N 0 -6.968 1.145 1.936
28 H221 H H4 N N N 0 -9.16 0.797 0.335
29 H241 H H5 N N N 0 -7.558 -1.697 1.358
30 H242 H H6 N N N 0 -9.271 -1.747 0.68
31 H031 H H7 N N N 0 -5.671 -0.74 1.176
32 H061 H H8 N N N 0 -2.102 1.441 -0.85
33 H062 H H9 N N N 0 -2.017 1.71 0.908
34 H071 H H10 N N N 0 -0.896 -0.484 1.19
35 H072 H H11 N N N 0 -0.981 -0.753 -0.568
36 H161 H H16 N N N 0 7.907 -1.427 1.889
37 H081 H H12 N N N 0 0.39 1.279 -0.945
38 H082 H H13 N N N 0 0.475 1.548 0.813
39 H111 H H14 N N N 0 2.008 2.442 -0.299
40 H121 H H15 N N N 0 4.249 3.427 -0.557
41 H163 H H17 N N N 0 7.23 0.211 2.056
42 H162 H H18 N N N 0 6.197 -1.212 2.333
43 H191 H H19 N N N 0 3.771 -1.417 0.217
44 H231 H H20 N N N 0 -8.375 -0.906 -1.6
45 H041 H H21 N N N 0 -4.594 1.771 0.122