Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : K5M    

Bonds between two atoms of the molecule

Total Number of Bonds: 47


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O17 S15 O S doub 1.42 N N
2 O18 S15 O S doub 1.42 N N
3 S15 C16 S C sing 1.81 N N
4 S15 C14 S C sing 1.76 N N
5 C13 C14 C C doub 1.38 N Y
6 C13 C12 C C sing 1.38 N Y
7 C14 C19 C C sing 1.38 N Y
8 C12 C11 C C doub 1.38 N Y
9 C19 C10 C C doub 1.39 N Y
10 O01 C02 O C doub 1.21 N N
11 C23 C24 C C sing 1.56 N N
12 C23 C02 C C sing 1.52 N N
13 C23 C22 C C sing 1.54 N N
14 C24 C22 C C sing 1.53 N N
15 C11 C10 C C sing 1.39 N Y
16 C10 O09 C O sing 1.36 N N
17 C02 C03 C C sing 1.52 N N
18 C22 C21 C C sing 1.54 N N
19 C08 O09 C O sing 1.43 N N
20 C08 C07 C C sing 1.53 N N
21 C03 C21 C C sing 1.55 N N
22 C03 N04 C N sing 1.47 N N
23 O20 C05 O C doub 1.21 N N
24 C07 C06 C C sing 1.53 N N
25 N04 C05 N C sing 1.35 N N
26 C05 C06 C C sing 1.51 N N
27 C13 H131 C H sing 1.08 N N
28 C21 H212 C H sing 1.09 N N
29 C21 H211 C H sing 1.09 N N
30 C22 H221 C H sing 1.09 N N
31 C24 H241 C H sing 1.09 N N
32 C24 H242 C H sing 1.09 N N
33 C03 H031 C H sing 1.09 N N
34 C06 H061 C H sing 1.09 N N
35 C06 H062 C H sing 1.09 N N
36 C07 H071 C H sing 1.09 N N
37 C07 H072 C H sing 1.09 N N
38 C08 H081 C H sing 1.09 N N
39 C08 H082 C H sing 1.09 N N
40 C11 H111 C H sing 1.08 N N
41 C12 H121 C H sing 1.08 N N
42 C16 H161 C H sing 1.09 N N
43 C16 H163 C H sing 1.09 N N
44 C16 H162 C H sing 1.09 N N
45 C19 H191 C H sing 1.08 N N
46 C23 H231 C H sing 1.09 N N
47 N04 H041 N H sing 0.97 N N