Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : KP9

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 79


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CBB C C1 N N N 0 -4.266 3.348 -0.203
2 CBA C C2 N N N 0 4.283 5.345 -0.414
3 CBC C C3 N N N 0 -4.389 -3.612 -0.038
4 NB N N1 N Y N 0 -0.269 1.421 0.131
5 ND N N2 N N N 0 2.106 -1.882 1.29
6 OD O O1 N N N 0 3.486 -2.169 3.072
7 C1A C C4 N N N 0 3.387 1.148 -1.673
8 C1B C C5 N Y N 0 0.089 2.703 0.45
9 C1C C C6 N N N 0 -1.739 -1.071 -0.225
10 C1D C C7 R N N 0 2.255 -2.102 -0.154
11 C2A C C8 N N N 0 4.368 2.043 -1.18
12 C2B C C9 N Y N 0 -1.059 3.396 0.83
13 C2C C C10 N N N 0 -2.383 -2.341 -0.6
14 C2D C C11 N N N 0 3.656 -2.631 -0.353
15 C3A C C12 N N N 0 3.754 2.924 -0.352
16 C3B C C13 N Y N 0 -2.127 2.523 0.742
17 C3C C C14 N N N 0 -1.327 -3.238 -0.793
18 C3D C C15 N N N 0 4.225 -2.697 0.863
19 C4A C C16 N N N 0 2.378 2.586 -0.319
20 C4B C C17 N Y N 0 -1.63 1.293 0.3
21 C4C C C18 N N N 0 -0.154 -2.539 -0.546
22 C4D C C19 N N N 0 3.265 -2.227 1.878
23 CAA C C20 N N N 0 4.413 4.054 0.396
24 CAB C C21 N N N 0 -3.565 2.841 1.059
25 CGB C C25 N N N 0 -5.704 3.665 0.114
26 CAC C C22 N N N 0 -3.814 -2.606 -0.741
27 CAD C C23 N N N 0 5.6 -3.162 1.139
28 CBD C C24 N N N 0 6.056 -3.184 2.384
29 CGC C C26 N N N 0 -5.79 -3.803 -0.093
30 CHA C C27 N N N 0 1.398 3.233 0.401
31 CHB C C28 N N N 0 -2.383 0.134 0.076
32 CHC C C29 N N N 0 1.23 -3.128 -0.639
33 CMA C C30 N N N 0 5.836 2.021 -1.518
34 CMB C C31 N N N 0 -1.124 4.839 1.261
35 NC N N4 N N N 0 -0.415 -1.293 -0.221
36 CMC C C32 N N N 0 -1.442 -4.687 -1.191
37 CMD C C33 N N N 0 4.294 -3.013 -1.664
38 NA N N3 N N N 0 2.194 1.489 -1.151
39 O1B O O2 N N N 0 -6.517 4.129 -0.849
40 O1C O O3 N N N 0 -6.479 -3.064 -0.772
41 O2B O O4 N N N 0 -6.126 3.503 1.234
42 HBC1 H H6 N N N 0 -3.778 -4.268 0.564
43 O2C O O5 N N N 0 -6.363 -4.805 0.607
44 OA O O6 N N N 0 3.589 0.227 -2.443
45 HBB2 H H1 N N N 0 -3.765 4.248 -0.56
46 HBB1 H H2 N N N 0 -4.225 2.58 -0.975
47 HBA3 H H3 N N N 0 4.767 5.219 -1.381
48 HBA2 H H4 N N N 0 3.228 5.576 -0.563
49 HBA1 H H5 N N N 0 4.76 6.163 0.127
50 HNB H H7 N N N 0 0.334 0.721 -0.166
51 HND H H8 N N N 0 1.314 -1.544 1.738
52 H1D1 H H9 N N N 0 2.128 -1.162 -0.692
53 HAA2 H H11 N N Y 0 5.468 3.824 0.545
54 HAA1 H H12 N N N 0 3.928 4.181 1.364
55 HAB1 H H13 N N N 0 -3.606 3.609 1.831
56 HAB2 H H14 N N N 0 -4.066 1.94 1.415
57 HAC1 H H15 N N N 0 -4.413 -2.001 -1.405
58 HAD1 H H16 N N N 0 6.234 -3.485 0.326
59 HBD1 H H17 N N N 0 5.422 -2.862 3.197
60 HBD2 H H18 N N N 0 7.061 -3.524 2.585
61 HHA1 H H19 N N N 0 1.631 4.147 0.928
62 HHB1 H H21 N N N 0 -3.46 0.17 0.137
63 HHC2 H H23 N N N 0 1.444 -3.393 -1.675
64 HHC1 H H24 N N N 0 1.288 -4.021 -0.017
65 HMA3 H H25 N N N 0 6.038 1.202 -2.208
66 HMA2 H H26 N N N 0 6.116 2.966 -1.983
67 HMA1 H H27 N N N 0 6.417 1.88 -0.606
68 HMB2 H H28 N N N 0 -1.292 5.471 0.39
69 HMB3 H H29 N N N 0 -1.943 4.97 1.968
70 HMB1 H H30 N N N 0 -0.185 5.118 1.738
71 HMC1 H H31 N N N 0 -2.494 -4.948 -1.312
72 HMC3 H H32 N N N 0 -0.917 -4.848 -2.132
73 HMC2 H H33 N N N 0 -1.0 -5.313 -0.416
74 HMD1 H H34 N N N 0 4.795 -2.144 -2.091
75 HMD2 H H35 N N N 0 5.022 -3.806 -1.496
76 HMD3 H H36 N N N 0 3.526 -3.364 -2.353
77 HNA H H37 N N N 0 1.351 1.041 -1.322
78 HO1B H H39 N N N 0 -7.431 4.319 -0.598
79 HO2C H H40 N N N 0 -7.323 -4.856 0.507