Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : L5A

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 S N N 0 1.474 0.237 -0.092
2 C11 C C2 S N N 0 3.0 0.218 -0.284
3 C12 C C3 N N N 0 1.102 1.671 0.339
4 C01 C C4 N Y N 0 -2.656 -1.472 -0.61
5 C02 C C5 N Y N 0 -3.441 -0.345 -0.762
6 C03 C C6 N Y N 0 -2.862 0.858 -1.123
7 C04 C C7 N Y N 0 -1.497 0.932 -1.331
8 C05 C C8 N Y N 0 -0.712 -0.195 -1.179
9 C06 C C9 N Y N 0 -1.291 -1.396 -0.813
10 C07 C C10 N N N 0 0.775 -0.114 -1.407
11 C08 C C11 N N N 0 3.637 -0.791 0.674
12 C09 C C12 N N N 0 5.119 -0.865 0.413
13 C13 C C13 N N N 0 2.407 2.232 0.957
14 C14 C C14 N N N 0 3.503 1.64 0.036
15 C17 C C15 N N N 0 -4.929 -0.426 -0.535
16 C18 C C16 N N N 0 -5.232 -0.135 0.913
17 O15 O O1 N N N 0 5.888 -1.691 1.14
18 O16 O O2 N N N 0 5.616 -0.18 -0.45
19 O19 O O3 N N N 0 -4.333 0.113 1.681
20 O20 O O4 N N N 0 -6.502 -0.151 1.349
21 H1 H H1 N N N 0 1.186 -0.473 0.684
22 H2 H H2 N N N 0 3.243 -0.042 -1.315
23 H3 H H3 N N N 0 0.803 2.263 -0.525
24 H4 H H4 N N N 0 0.304 1.651 1.081
25 H5 H H5 N N N 0 -3.109 -2.411 -0.329
26 H6 H H6 N N N 0 -3.476 1.738 -1.242
27 H7 H H7 N N N 0 -1.045 1.871 -1.613
28 H8 H H8 N N N 0 -0.678 -2.277 -0.695
29 H9 H H9 N N N 0 0.988 0.656 -2.148
30 H10 H H10 N N N 0 1.141 -1.076 -1.767
31 H11 H H11 N N N 0 3.464 -0.475 1.702
32 H12 H H12 N N N 0 3.191 -1.773 0.516
33 H13 H H13 N N N 0 2.415 3.321 0.918
34 H14 H H14 N N N 0 2.53 1.883 1.982
35 H15 H H15 N N N 0 4.458 1.599 0.559
36 H16 H H16 N N N 0 3.592 2.228 -0.877
37 H17 H H17 N N N 0 -5.433 0.305 -1.166
38 H18 H H18 N N N 0 -5.28 -1.427 -0.785
39 H19 H H19 N N N 0 6.834 -1.703 0.937
40 H20 H H20 N N N 0 -6.647 0.042 2.285