Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : L5F

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 74


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C8 C C1 N N N 0 4.665 0.783 -2.116
2 C9 C C2 N Y N 0 3.795 1.26 -0.982
3 O1 O O1 N N N 0 6.266 -3.332 1.39
4 O5 O O2 N N N 0 -3.909 -2.823 -1.782
5 O4 O O3 N N N 0 -3.465 -3.804 0.472
6 S6 S S1 N N N 0 -3.609 -2.691 -0.4
7 O7 O O4 N N N 0 -4.702 -1.831 0.19
8 C10 C C3 N Y N 0 3.346 0.374 -0.045
9 C11 C C4 N Y N 0 2.572 0.807 1.025
10 C12 C C5 N Y N 0 2.207 2.12 1.133
11 C13 C C6 N Y N 0 2.62 3.034 0.17
12 C14 C C7 N Y N 0 3.448 2.615 -0.885
13 N15 N N1 N Y N 0 3.738 3.7 -1.63
14 N16 N N2 N Y N 0 3.139 4.738 -1.163
15 N17 N N3 N Y N 0 2.387 4.372 -0.038
16 C18 C C8 N N N 0 1.504 5.237 0.75
17 C19 C C9 N N N 0 0.149 5.353 0.05
18 O20 O O5 N N N 0 -0.835 4.635 0.799
19 C21 C C10 N N N 0 -2.035 4.365 0.072
20 C22 C C11 N N N 0 -3.2 4.198 1.049
21 O23 O O6 N N N 0 -4.325 3.649 0.36
22 C24 C C12 N Y N 0 -3.274 1.518 0.486
23 C25 C C13 N Y N 0 -4.408 2.3 0.278
24 C26 C C14 N Y N 0 -5.615 1.68 -0.025
25 C27 C C15 N Y N 0 -5.687 0.303 -0.071
26 C28 C C16 N Y N 0 -4.564 -0.485 0.173
27 C29 C C17 N Y N 0 -3.351 0.138 0.42
28 C30 C C18 N N N 0 -2.1 -0.696 0.608
29 N31 N N4 S N N 0 -2.18 -1.845 -0.31
30 C32 C C19 N N N 0 -1.413 -3.474 -1.94
31 C33 C C20 R N N 0 -1.053 -2.21 -1.156
32 C34 C C21 N N N 0 -0.965 -4.343 0.809
33 C35 C C22 N Y N 0 2.54 -2.956 1.02
34 C36 C C23 N Y N 0 1.423 -3.739 1.25
35 C37 C C24 N Y N 0 0.253 -3.493 0.556
36 C38 C C25 N Y N 0 0.199 -2.468 -0.37
37 C39 C C26 N Y N 0 1.313 -1.678 -0.591
38 C40 C C27 N Y N 0 2.484 -1.927 0.098
39 C41 C C28 S N N 0 3.707 -1.083 -0.162
40 C42 C C29 N N N 0 4.789 -1.424 0.865
41 C43 C C30 N N N 0 5.305 -2.816 0.607
42 O44 O O7 N N N 0 4.853 -3.469 -0.304
43 H81 H H1 N N N 0 4.038 0.49 -2.958
44 H82 H H2 N N N 0 5.334 1.586 -2.424
45 H83 H H3 N N N 0 5.254 -0.074 -1.786
46 H1 H H4 N N N 0 6.564 -4.229 1.186
47 H11 H H5 N N N 0 2.255 0.1 1.777
48 H12 H H6 N N N 0 1.6 2.446 1.965
49 H182 H H7 N N N 0 1.365 4.807 1.742
50 H181 H H8 N N N 0 1.952 6.227 0.842
51 H191 H H9 N N N 0 -0.138 6.402 -0.015
52 H192 H H10 N N N 0 0.221 4.932 -0.953
53 H211 H H11 N N N 0 -2.245 5.193 -0.604
54 H212 H H12 N N N 0 -1.911 3.448 -0.505
55 H221 H H13 N N N 0 -2.905 3.526 1.855
56 H222 H H14 N N N 0 -3.468 5.169 1.465
57 H24 H H15 N N N 0 -2.328 1.992 0.7
58 H26 H H16 N N N 0 -6.494 2.275 -0.223
59 H27 H H17 N N N 0 -6.63 -0.171 -0.299
60 H301 H H18 N N N 0 -1.22 -0.097 0.374
61 H302 H H19 N N N 0 -2.044 -1.05 1.637
62 H323 H H20 N N N 0 -1.87 -3.194 -2.89
63 H321 H H21 N N N 0 -0.51 -4.055 -2.128
64 H322 H H22 N N N 0 -2.117 -4.073 -1.362
65 H33 H H23 N N N 0 -0.864 -1.401 -1.861
66 H342 H H24 N N N 0 -1.624 -3.834 1.513
67 H343 H H25 N N N 0 -1.494 -4.509 -0.129
68 H341 H H26 N N N 0 -0.658 -5.301 1.228
69 H35 H H27 N N N 0 3.455 -3.149 1.56
70 H36 H H28 N N N 0 1.465 -4.542 1.971
71 H39 H H29 N N N 0 1.267 -0.867 -1.303
72 H41 H H30 N N N 0 4.082 -1.286 -1.165
73 H422 H H31 N N N 0 5.609 -0.711 0.78
74 H421 H H32 N N N 0 4.366 -1.373 1.869