Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : LMY

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 80


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C10 C C1 N N N 0 -6.498 3.653 0.053
2 C20 C C2 N N N 0 -0.798 -3.433 -0.686
3 C22 C C3 N N N 0 0.4 -2.128 0.967
4 C24 C C4 N N N 0 1.584 -3.746 -0.391
5 C26 C C5 N Y N 0 3.285 -2.372 -1.57
6 C28 C C6 N Y N 0 5.313 -1.638 -0.453
7 C01 C C7 N Y N 0 -6.012 -2.469 1.173
8 C03 C C8 N Y N 0 -4.37 -0.918 0.693
9 C04 C C9 N Y N 0 -5.364 0.092 0.608
10 C05 C C10 N Y N 0 -6.692 -0.286 0.815
11 C07 C C11 N Y N 0 -5.241 1.51 0.321
12 C08 C C12 N Y N 0 -6.379 2.175 0.319
13 C11 C C13 N N N 0 -6.689 3.889 -1.447
14 C16 C C14 N N N 0 -7.747 -4.148 1.687
15 C18 C C15 N N N 0 -2.021 -1.66 0.577
16 C19 C C16 N N N 0 -1.904 -2.378 -0.77
17 C23 C C17 N N N 0 -0.669 -1.035 0.933
18 C25 C C18 N Y N 0 2.893 -3.0 -0.423
19 C27 C C19 N Y N 0 4.504 -1.683 -1.605
20 C29 C C20 N Y N 0 4.89 -2.282 0.706
21 C30 C C21 N Y N 0 3.69 -2.958 0.714
22 C31 C C22 N Y N 0 5.18 -0.953 -2.613
23 C32 C C23 N Y N 0 6.344 -0.494 -2.081
24 C34 C C24 N N N 0 7.543 -0.61 0.145
25 C35 C C25 N N N 0 7.259 0.698 0.886
26 C36 C C26 N N N 0 6.077 1.054 1.821
27 C37 C C27 N N N 0 6.882 2.377 1.829
28 C38 C C28 N N N 0 7.037 2.119 0.309
29 C39 C C29 N N N 0 8.12 1.424 1.943
30 C41 C C30 N N N 0 7.428 4.681 2.405
31 C43 C C31 N N N 0 2.412 -2.426 -2.797
32 C44 C C32 N N N 0 7.32 0.292 -2.774
33 F12 F F1 N N N 0 -5.588 3.377 -2.142
34 F13 F F2 N N N 0 -7.853 3.242 -1.876
35 F14 F F3 N N N 0 -6.8 5.261 -1.693
36 N02 N N1 N Y N 0 -4.737 -2.159 0.973
37 N06 N N2 N Y N 0 -6.971 -1.566 1.099
38 N15 N N3 N N N 0 -6.346 -3.781 1.463
39 N17 N N4 N N N 0 -3.038 -0.61 0.487
40 N21 N N5 N N N 0 0.474 -2.785 -0.344
41 N33 N N6 N Y N 0 6.435 -0.905 -0.766
42 N40 N N7 N N N 0 6.592 3.632 2.528
43 N45 N N8 N N N 0 8.094 0.916 -3.324
44 O42 O O1 N N N 0 8.421 4.587 1.715
45 S09 S S1 N Y N 0 -7.737 1.119 0.662
46 H1 H H1 N N N 0 -7.356 4.051 0.595
47 H2 H H2 N N N 0 -5.592 4.157 0.388
48 H3 H H3 N N N 0 -1.051 -4.164 0.083
49 H4 H H4 N N N 0 -0.703 -3.936 -1.648
50 H5 H H5 N N N 0 1.367 -1.684 1.206
51 H6 H H6 N N N 0 0.142 -2.865 1.728
52 H7 H H7 N N N 0 1.494 -4.362 -1.285
53 H8 H H8 N N N 0 1.551 -4.382 0.494
54 H9 H H9 N N N 0 -4.29 1.984 0.126
55 H10 H H10 N N N 0 -7.814 -5.215 1.901
56 H11 H H11 N N N 0 -8.139 -3.583 2.533
57 H12 H H12 N N N 0 -8.33 -3.918 0.795
58 H13 H H13 N N N 0 -2.305 -2.376 1.349
59 H14 H H14 N N N 0 -1.658 -1.655 -1.548
60 H15 H H15 N N N 0 -2.851 -2.862 -1.008
61 H16 H H16 N N N 0 -0.734 -0.558 1.911
62 H17 H H17 N N N 0 -0.404 -0.29 0.182
63 H18 H H18 N N N 0 5.502 -2.255 1.596
64 H19 H H19 N N N 0 3.363 -3.456 1.615
65 H20 H H20 N N N 0 4.834 -0.79 -3.622
66 H21 H H21 N N N 0 8.467 -0.511 -0.425
67 H22 H H22 N N N 0 7.646 -1.421 0.867
68 H23 H H23 N N N 0 5.104 1.11 1.333
69 H24 H H24 N N N 0 6.063 0.517 2.77
70 H25 H H25 N N N 0 7.916 2.572 -0.148
71 H26 H H26 N N N 0 6.124 2.241 -0.273
72 H27 H H27 N N N 0 8.207 0.906 2.898
73 H28 H H28 N N N 0 9.063 1.824 1.571
74 H29 H H29 N N N 0 7.214 5.606 2.92
75 H30 H H30 N N N 0 1.659 -1.64 -2.741
76 H31 H H31 N N N 0 3.025 -2.279 -3.686
77 H32 H H32 N N N 0 1.92 -3.397 -2.851
78 H33 H H33 N N N 0 -5.654 -4.458 1.517
79 H34 H H34 N N N 0 -2.777 0.302 0.283
80 H36 H H36 N N N 0 5.798 3.707 3.08