Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : LMY    

Bonds between two atoms of the molecule

Total Number of Bonds: 86


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N45 C44 N C trip 1.14 N N
2 C44 C32 C C sing 1.43 N N
3 C34 N33 C N sing 1.46 N N
4 C34 C35 C C sing 1.53 N N
5 C32 N33 C N sing 1.38 N Y
6 C32 C31 C C doub 1.36 N Y
7 N33 C28 N C sing 1.38 N Y
8 C10 C08 C C sing 1.51 N N
9 C10 C11 C C sing 1.53 N N
10 C31 C27 C C sing 1.42 N Y
11 C08 S09 C S sing 1.75 N Y
12 C08 C07 C C doub 1.32 N Y
13 C38 C35 C C sing 1.55 N N
14 C38 C37 C C sing 1.55 N N
15 S09 C05 S C sing 1.76 N Y
16 C35 C39 C C sing 1.54 N N
17 C35 C36 C C sing 1.55 N N
18 C07 C04 C C sing 1.45 N Y
19 C28 C27 C C doub 1.41 N Y
20 C28 C29 C C sing 1.39 N Y
21 C27 C26 C C sing 1.4 N Y
22 C05 C04 C C doub 1.4 N Y
23 C05 N06 C N sing 1.34 N Y
24 C39 C37 C C sing 1.57 N N
25 C19 C20 C C sing 1.53 N N
26 C19 C18 C C sing 1.53 N N
27 F14 C11 F C sing 1.4 N N
28 C04 C03 C C sing 1.42 N Y
29 N06 C01 N C doub 1.32 N Y
30 C11 F13 C F sing 1.4 N N
31 C11 F12 C F sing 1.4 N N
32 C29 C30 C C doub 1.38 N Y
33 C20 N21 C N sing 1.47 N N
34 C03 N17 C N sing 1.38 N N
35 C03 N02 C N doub 1.32 N Y
36 N17 C18 N C sing 1.46 N N
37 C26 C43 C C sing 1.51 N N
38 C26 C25 C C doub 1.37 N Y
39 C01 N02 C N sing 1.33 N Y
40 C01 N15 C N sing 1.38 N N
41 C37 C36 C C sing 1.55 N N
42 C37 N40 C N sing 1.47 N N
43 C18 C23 C C sing 1.53 N N
44 N15 C16 N C sing 1.47 N N
45 C30 C25 C C sing 1.39 N Y
46 C25 C24 C C sing 1.51 N N
47 N40 C41 N C sing 1.35 N N
48 N21 C24 N C sing 1.47 N N
49 N21 C22 N C sing 1.47 N N
50 C23 C22 C C sing 1.53 N N
51 O42 C41 O C doub 1.21 N N
52 C10 H1 C H sing 1.09 N N
53 C10 H2 C H sing 1.09 N N
54 C20 H3 C H sing 1.09 N N
55 C20 H4 C H sing 1.09 N N
56 C22 H5 C H sing 1.09 N N
57 C22 H6 C H sing 1.09 N N
58 C24 H7 C H sing 1.09 N N
59 C24 H8 C H sing 1.09 N N
60 C07 H9 C H sing 1.08 N N
61 C16 H10 C H sing 1.09 N N
62 C16 H11 C H sing 1.09 N N
63 C16 H12 C H sing 1.09 N N
64 C18 H13 C H sing 1.09 N N
65 C19 H14 C H sing 1.09 N N
66 C19 H15 C H sing 1.09 N N
67 C23 H16 C H sing 1.09 N N
68 C23 H17 C H sing 1.09 N N
69 C29 H18 C H sing 1.08 N N
70 C30 H19 C H sing 1.08 N N
71 C31 H20 C H sing 1.08 N N
72 C34 H21 C H sing 1.09 N N
73 C34 H22 C H sing 1.09 N N
74 C36 H23 C H sing 1.09 N N
75 C36 H24 C H sing 1.09 N N
76 C38 H25 C H sing 1.09 N N
77 C38 H26 C H sing 1.09 N N
78 C39 H27 C H sing 1.09 N N
79 C39 H28 C H sing 1.09 N N
80 C41 H29 C H sing 1.08 N N
81 C43 H30 C H sing 1.09 N N
82 C43 H31 C H sing 1.09 N N
83 C43 H32 C H sing 1.09 N N
84 N15 H33 N H sing 0.97 N N
85 N17 H34 N H sing 0.97 N N
86 N40 H36 N H sing 0.97 N N