Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : M8V

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 46


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C15 C C1 N Y N 0 -3.166 -1.749 0.904
2 C23 C C2 N Y N 0 -2.217 -0.235 -0.704
3 C16 C C3 N Y N 0 -4.365 -1.066 0.834
4 C22 C C4 N Y N 0 -3.421 0.437 -0.778
5 C14 C C5 N Y N 0 -2.086 -1.334 0.134
6 C17 C C6 N Y N 0 -4.492 0.025 -0.006
7 C2 C C7 N N N 0 3.363 -0.59 0.878
8 C25 C C8 N N N 0 3.184 -0.768 -1.331
9 C12 C C9 N N N 0 0.291 -1.356 0.059
10 C7 C C10 N N N 0 6.625 2.189 0.377
11 C6 C C11 N N N 0 6.85 0.734 -0.037
12 C8 C C12 N N N 0 5.227 2.634 -0.058
13 C5 C C13 N N N 0 5.807 -0.156 0.643
14 C9 C C14 N N N 0 4.178 1.752 0.622
15 C3 C C15 N N N 0 4.408 0.295 0.238
16 C11 C C16 N N N 0 1.594 -2.112 0.015
17 N4 N N1 N N N 0 4.203 0.103 -1.203
18 N10 N N2 N N N 0 2.702 -1.167 -0.147
19 N20 N N3 N N N 0 -5.976 2.088 1.051
20 N13 N N4 N N N 0 -0.871 -2.023 0.204
21 O1 O O1 N N N 0 3.165 -0.752 2.063
22 O26 O O2 N N N 0 2.75 -1.15 -2.4
23 O24 O O3 N N N 0 0.288 -0.147 -0.035
24 O19 O O4 N N N 0 -6.043 1.545 -1.356
25 O21 O O5 N N N 0 -7.027 -0.023 0.324
26 S18 S S1 N N N 0 -6.023 0.892 -0.094
27 H1 H H1 N N N 0 -3.066 -2.601 1.56
28 H2 H H2 N N N 0 -1.38 0.087 -1.307
29 H3 H H3 N N N 0 -5.203 -1.386 1.434
30 H4 H H4 N N N 0 -3.526 1.284 -1.438
31 H5 H H5 N N N 0 6.713 2.277 1.46
32 H6 H H6 N N N 0 7.373 2.823 -0.1
33 H7 H H7 N N N 0 6.754 0.645 -1.119
34 H8 H H8 N N N 0 7.849 0.42 0.266
35 H9 H H9 N N N 0 5.07 3.674 0.23
36 H10 H H10 N N N 0 5.136 2.539 -1.14
37 H11 H H11 N N N 0 5.958 -1.191 0.337
38 H12 H H12 N N N 0 5.914 -0.079 1.725
39 H13 H H13 N N N 0 4.259 1.859 1.704
40 H14 H H14 N N N 0 3.182 2.059 0.301
41 H15 H H15 N N N 0 1.724 -2.667 0.944
42 H16 H H16 N N N 0 1.583 -2.806 -0.825
43 H17 H H17 N N N 0 4.703 0.521 -1.922
44 H18 H H18 N N N 0 -5.19 2.194 1.609
45 H19 H H19 N N N 0 -6.733 2.684 1.162
46 H20 H H20 N N N 0 -0.864 -2.981 0.356