Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : M8V    

Bonds between two atoms of the molecule

Total Number of Bonds: 48


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C8 C9 C C sing 1.53 N N
2 C8 C7 C C sing 1.53 N N
3 C9 C3 C C sing 1.52 N N
4 C7 C6 C C sing 1.53 N N
5 O1 C2 O C doub 1.21 N N
6 C3 C2 C C sing 1.51 N N
7 C3 C5 C C sing 1.52 N N
8 C3 N4 C N sing 1.47 N N
9 C6 C5 C C sing 1.53 N N
10 C2 N10 C N sing 1.35 N N
11 N4 C25 N C sing 1.35 N N
12 N10 C11 N C sing 1.47 N N
13 N10 C25 N C sing 1.34 N N
14 C11 C12 C C sing 1.51 N N
15 C25 O26 C O doub 1.22 N N
16 O24 C12 O C doub 1.21 N N
17 C12 N13 C N sing 1.35 N N
18 N13 C14 N C sing 1.4 N N
19 C14 C23 C C doub 1.39 N Y
20 C14 C15 C C sing 1.39 N Y
21 C23 C22 C C sing 1.38 N Y
22 C15 C16 C C doub 1.38 N Y
23 C22 C17 C C doub 1.38 N Y
24 C16 C17 C C sing 1.38 N Y
25 C17 S18 C S sing 1.76 N N
26 N20 S18 N S sing 1.66 N N
27 O21 S18 O S doub 1.42 N N
28 S18 O19 S O doub 1.42 N N
29 C15 H1 C H sing 1.08 N N
30 C23 H2 C H sing 1.08 N N
31 C16 H3 C H sing 1.08 N N
32 C22 H4 C H sing 1.08 N N
33 C7 H5 C H sing 1.09 N N
34 C7 H6 C H sing 1.09 N N
35 C6 H7 C H sing 1.09 N N
36 C6 H8 C H sing 1.09 N N
37 C8 H9 C H sing 1.09 N N
38 C8 H10 C H sing 1.09 N N
39 C5 H11 C H sing 1.09 N N
40 C5 H12 C H sing 1.09 N N
41 C9 H13 C H sing 1.09 N N
42 C9 H14 C H sing 1.09 N N
43 C11 H15 C H sing 1.09 N N
44 C11 H16 C H sing 1.09 N N
45 N4 H17 N H sing 0.97 N N
46 N20 H18 N H sing 0.97 N N
47 N20 H19 N H sing 0.97 N N
48 N13 H20 N H sing 0.97 N N