Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : MJD

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 90


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CAE C C1 R N N 0 6.36 3.197 -1.516
2 CAH C C2 N N N 0 6.844 1.937 -2.251
3 CAG C C3 R N N 0 5.614 1.0 -2.102
4 CAJ C C4 N N N 0 4.57 1.588 -3.071
5 OAI O O1 N N N 0 4.166 2.854 -2.58
6 CAA C C5 R N N 0 5.161 3.834 -2.264
7 OAB O O2 N N N 0 4.538 4.581 -1.168
8 CAC C C6 N N N 0 4.439 3.62 -0.094
9 CAD C C7 S N N 0 5.63 2.653 -0.25
10 CAF C C8 S N N 0 5.12 1.259 -0.66
11 OAK O O3 N N N 0 3.668 1.234 -0.623
12 CAL C C9 N N N 0 3.085 0.055 -0.337
13 OAM O O4 N N N 0 3.77 -0.927 -0.125
14 NAN N N1 N N N 0 1.741 -0.038 -0.287
15 CAO C C10 S N N 0 1.106 -1.321 0.024
16 CAW C C11 N N N 0 1.029 -1.498 1.541
17 CBH C C12 N Y N 0 2.422 -1.595 2.108
18 CBI C C13 N Y N 0 3.037 -2.827 2.222
19 CBJ C C14 N Y N 0 4.317 -2.918 2.742
20 FBV F F1 N N N 0 4.917 -4.123 2.854
21 CBK C C15 N Y N 0 4.981 -1.773 3.147
22 CBL C C16 N Y N 0 4.365 -0.539 3.032
23 FBT F F2 N N N 0 5.012 0.579 3.426
24 CBM C C17 N Y N 0 3.087 -0.45 2.507
25 CAT C C18 R N N 0 -0.305 -1.347 -0.566
26 OBO O O5 N N N 0 -1.11 -0.361 0.082
27 CAP C C19 N N N 0 -0.922 -2.731 -0.35
28 NAQ N N2 N N N 0 -2.217 -2.8 -1.033
29 CBP C C20 N N N 0 -2.277 -2.752 -2.496
30 CBQ C C21 N N N 0 -2.068 -4.159 -3.061
31 CBS C C22 N N N 0 -3.233 -5.056 -2.637
32 CBR C C23 N N N 0 -2.007 -4.09 -4.588
33 SAR S S1 N N N 0 -3.612 -2.933 -0.15
34 OAU O O6 N N N 0 -4.623 -3.348 -1.059
35 OAV O O7 N N N 0 -3.276 -3.659 1.024
36 CAS C C24 N Y N 0 -4.052 -1.31 0.376
37 CAX C C25 N Y N 0 -4.76 -0.483 -0.472
38 CBB C C26 N Y N 0 -3.69 -0.876 1.642
39 CBA C C27 N Y N 0 -4.028 0.391 2.067
40 CAZ C C28 N Y N 0 -4.739 1.239 1.218
41 NBE N N3 N Y N 0 -5.211 2.51 1.339
42 CAY C C29 N Y N 0 -5.108 0.793 -0.06
43 OBC O O8 N Y N 0 -5.775 1.816 -0.643
44 CBD C C30 N Y N 0 -5.825 2.837 0.23
45 NBF N N4 N N N 0 -6.43 4.05 -0.008
46 CBG C C31 N N N 0 -6.414 5.092 1.022
47 CBU C C32 N N N 0 -6.556 6.464 0.361
48 CBN C C33 N N N 0 -7.577 4.869 1.99
49 H1 H H1 N N N 0 7.161 3.905 -1.304
50 H2 H H2 N N N 0 7.048 2.15 -3.301
51 H3 H H3 N N N 0 7.721 1.512 -1.764
52 H4 H H4 N N N 0 5.844 -0.046 -2.305
53 H5 H H5 N N N 0 5.011 1.702 -4.061
54 H6 H H6 N N N 0 3.707 0.924 -3.128
55 H7 H H7 N N N 0 5.456 4.441 -3.12
56 H8 H H8 N N N 0 4.496 4.129 0.868
57 H9 H H9 N N N 0 3.501 3.071 -0.171
58 H10 H H10 N N N 0 6.271 2.631 0.631
59 H11 H H11 N N N 0 5.524 0.503 0.013
60 H12 H H12 N N N 0 1.195 0.745 -0.456
61 H16 H H16 N N N 0 2.518 -3.72 1.906
62 H13 H H13 N N N 0 1.695 -2.131 -0.407
63 H14 H H14 N N N 0 0.517 -0.642 1.981
64 H15 H H15 N N N 0 0.478 -2.409 1.774
65 H17 H H17 N N N 0 5.979 -1.842 3.553
66 H18 H H18 N N N 0 2.607 0.513 2.413
67 H19 H H19 N N N 0 -0.257 -1.133 -1.633
68 H20 H H20 N N N 0 -1.237 -0.516 1.028
69 H22 H H22 N N N 0 -1.064 -2.903 0.717
70 H21 H H21 N N N 0 -0.256 -3.493 -0.755
71 H23 H H23 N N N 0 -3.251 -2.376 -2.807
72 H24 H H24 N N N 0 -1.495 -2.091 -2.87
73 H25 H H25 N N N 0 -1.135 -4.57 -2.678
74 H26 H H26 N N N 0 -4.167 -4.645 -3.021
75 H27 H H27 N N N 0 -3.085 -6.058 -3.04
76 H28 H H28 N N N 0 -3.277 -5.105 -1.549
77 H29 H H29 N N N 0 -1.177 -3.451 -4.89
78 H30 H H30 N N N 0 -1.858 -5.092 -4.991
79 H31 H H31 N N N 0 -2.941 -3.679 -4.972
80 H32 H H32 N N N 0 -5.042 -0.83 -1.455
81 H33 H H33 N N N 0 -3.139 -1.533 2.299
82 H34 H H34 N N N 0 -3.743 0.725 3.054
83 H35 H H35 N N N 0 -6.866 4.216 -0.859
84 H36 H H36 N N N 0 -5.472 5.048 1.568
85 H37 H H37 N N N 0 -7.498 6.509 -0.186
86 H38 H H38 N N N 0 -6.544 7.24 1.128
87 H39 H H39 N N N 0 -5.728 6.623 -0.329
88 H40 H H40 N N N 0 -7.475 3.891 2.461
89 H41 H H41 N N N 0 -7.565 5.644 2.757
90 H42 H H42 N N N 0 -8.519 4.913 1.444