Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : MJD    

Bonds between two atoms of the molecule

Total Number of Bonds: 95


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CBG CBU C C sing 1.53 N N
2 CBG NBF C N sing 1.47 N N
3 CBG CBN C C sing 1.53 N N
4 NBF CBD N C sing 1.38 N N
5 CBD NBE C N doub 1.31 N Y
6 CBD OBC C O sing 1.34 N Y
7 NBE CAZ N C sing 1.36 N Y
8 OBC CAY O C sing 1.35 N Y
9 CAZ CAY C C doub 1.4 N Y
10 CAZ CBA C C sing 1.39 N Y
11 CAY CAX C C sing 1.39 N Y
12 CBA CBB C C doub 1.38 N Y
13 CAX CAS C C doub 1.38 N Y
14 CBB CAS C C sing 1.39 N Y
15 CAS SAR C S sing 1.76 N N
16 SAR OAU S O doub 1.42 N N
17 SAR OAV S O doub 1.42 N N
18 SAR NAQ S N sing 1.66 N N
19 CBP NAQ C N sing 1.47 N N
20 CBP CBQ C C sing 1.53 N N
21 NAQ CAP N C sing 1.47 N N
22 CAP CAT C C sing 1.53 N N
23 CBR CBQ C C sing 1.53 N N
24 CBQ CBS C C sing 1.53 N N
25 CAT OBO C O sing 1.43 N N
26 CAT CAO C C sing 1.53 N N
27 CAW CAO C C sing 1.53 N N
28 CAW CBH C C sing 1.51 N N
29 CBI CBH C C doub 1.38 N Y
30 CBI CBJ C C sing 1.38 N Y
31 FBV CBJ F C sing 1.35 N N
32 CAO NAN C N sing 1.46 N N
33 CBH CBM C C sing 1.38 N Y
34 CBJ CBK C C doub 1.38 N Y
35 CBM CBL C C doub 1.38 N Y
36 CBK CBL C C sing 1.38 N Y
37 NAN CAL N C sing 1.35 N N
38 CBL FBT C F sing 1.35 N N
39 OAM CAL O C doub 1.22 N N
40 CAL OAK C O sing 1.35 N N
41 OAK CAF O C sing 1.45 N N
42 CAF CAD C C sing 1.54 N N
43 CAF CAG C C sing 1.55 N N
44 CAC CAD C C sing 1.54 N N
45 CAC OAB C O sing 1.44 N N
46 CAD CAE C C sing 1.56 N N
47 CAG CAJ C C sing 1.54 N N
48 CAG CAH C C sing 1.55 N N
49 OAB CAA O C sing 1.47 N N
50 CAJ OAI C O sing 1.42 N N
51 CAE CAH C C sing 1.54 N N
52 CAE CAA C C sing 1.55 N N
53 CAA OAI C O sing 1.43 N N
54 CAE H1 C H sing 1.09 N N
55 CAH H2 C H sing 1.09 N N
56 CAH H3 C H sing 1.09 N N
57 CAG H4 C H sing 1.09 N N
58 CAJ H5 C H sing 1.09 N N
59 CAJ H6 C H sing 1.09 N N
60 CAA H7 C H sing 1.09 N N
61 CAC H8 C H sing 1.09 N N
62 CAC H9 C H sing 1.09 N N
63 CAD H10 C H sing 1.09 N N
64 CAF H11 C H sing 1.09 N N
65 NAN H12 N H sing 0.97 N N
66 CAO H13 C H sing 1.09 N N
67 CAW H14 C H sing 1.09 N N
68 CAW H15 C H sing 1.09 N N
69 CBI H16 C H sing 1.08 N N
70 CBK H17 C H sing 1.08 N N
71 CBM H18 C H sing 1.08 N N
72 CAT H19 C H sing 1.09 N N
73 OBO H20 O H sing 0.97 N N
74 CAP H21 C H sing 1.09 N N
75 CAP H22 C H sing 1.09 N N
76 CBP H23 C H sing 1.09 N N
77 CBP H24 C H sing 1.09 N N
78 CBQ H25 C H sing 1.09 N N
79 CBS H26 C H sing 1.09 N N
80 CBS H27 C H sing 1.09 N N
81 CBS H28 C H sing 1.09 N N
82 CBR H29 C H sing 1.09 N N
83 CBR H30 C H sing 1.09 N N
84 CBR H31 C H sing 1.09 N N
85 CAX H32 C H sing 1.08 N N
86 CBB H33 C H sing 1.08 N N
87 CBA H34 C H sing 1.08 N N
88 NBF H35 N H sing 0.97 N N
89 CBG H36 C H sing 1.09 N N
90 CBU H37 C H sing 1.09 N N
91 CBU H38 C H sing 1.09 N N
92 CBU H39 C H sing 1.09 N N
93 CBN H40 C H sing 1.09 N N
94 CBN H41 C H sing 1.09 N N
95 CBN H42 C H sing 1.09 N N